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biology/py-scikit-bio: update 0.6.2 → 0.6.3

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This commit is contained in:
Yuri Victorovich 2025-01-13 17:51:33 -08:00
parent 3802dfdd34
commit 08fa8f9c4b
2 changed files with 11 additions and 6 deletions
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11
biology/py-scikit-bio/Makefile
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@ -1,5 +1,5 @@
PORTNAME= scikit-bio PORTNAME= scikit-bio
DISTVERSION= 0.6.2 DISTVERSION= 0.6.3
CATEGORIES= biology education python CATEGORIES= biology education python
MASTER_SITES= PYPI MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -34,10 +34,9 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FL
${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0:math/py-statsmodels@${PY_FLAVOR} ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0:math/py-statsmodels@${PY_FLAVOR}
USES= python USES= python
USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 USE_PYTHON= pep517 cython autoplist pytest
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
TEST_WRKSRC= ${WRKSRC}/skbio/tests
CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py
@ -53,4 +52,10 @@ post-install:
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so
do-test: # tests fail to run in a regular way, see https://github.com/biocore/scikit-bio/issues/1846
@cd ${STAGEDIR}${PYTHON_SITELIBDIR} && \
${SETENV} ${TEST_ENV} pytest .
# tests as of 0.6.3: 2792 passed, 30 skipped, 56 warnings in 250.28s (0:04:10)
.include <bsd.port.mk> .include <bsd.port.mk>

6
biology/py-scikit-bio/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1720838021 TIMESTAMP = 1736808587
SHA256 (scikit-bio-0.6.2.tar.gz) = af217ad12243cdaeef74a8f3bebe0d04aefda2a22d963d634201a36318b1a404 SHA256 (scikit-bio-0.6.3.tar.gz) = f06cc87a1823902906821819e66f7cd704563a9f8cdf6720296a42dcbc2fe1c2
SIZE (scikit-bio-0.6.2.tar.gz) = 2699488 SIZE (scikit-bio-0.6.3.tar.gz) = 5356619