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biology/bwa: update 0.7.18 => 0.7.19

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ChangeLog:
https://github.com/lh3/bwa/blob/master/NEWS.md#release-0719-22-march-2025

Notable changes:

 * Bugfix: internal @HD lines. The bug was introduced in 0.7.18.
 * Merged #414, #391, #346, #312, #311, #308, #291, #288, #286 and #212

PR:		285620
Reported by:	alster@vinterdalen.se (maintainer)
This commit is contained in:
Älven 2025-03-24 19:13:29 +01:00 committed by Fernando Apesteguía
parent df5d6c9e1c
commit b66379cdc6
3 changed files with 7 additions and 7 deletions
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2
biology/bwa/Makefile
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@ -1,6 +1,6 @@
PORTNAME= bwa PORTNAME= bwa
DISTVERSIONPREFIX= v DISTVERSIONPREFIX= v
DISTVERSION= 0.7.18 DISTVERSION= 0.7.19
CATEGORIES= biology CATEGORIES= biology
MAINTAINER= alster@vinterdalen.se MAINTAINER= alster@vinterdalen.se

6
biology/bwa/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1732300398 TIMESTAMP = 1742771512
SHA256 (lh3-bwa-v0.7.18_GH0.tar.gz) = 194788087f7b9a77c0114aa481b2ef21439f6abab72488c83917302e8d0e7870 SHA256 (lh3-bwa-v0.7.19_GH0.tar.gz) = cdff5db67652c5b805a3df08c4e813a822c65791913eccfb3cf7d528588f37bc
SIZE (lh3-bwa-v0.7.18_GH0.tar.gz) = 238036 SIZE (lh3-bwa-v0.7.19_GH0.tar.gz) = 238518

6
biology/bwa/files/patch-Makefile
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@ -1,11 +1,11 @@
--- Makefile.orig 2014-05-19 13:11:41 UTC --- Makefile.orig 2025-03-22 18:55:09 UTC
+++ Makefile +++ Makefile
@@ -1,6 +1,6 @@ @@ -1,6 +1,6 @@
-CC= gcc -CC= gcc
+CC?= gcc +CC?= gcc
#CC= clang --analyze #CC= clang --analyze
-CFLAGS= -g -Wall -Wno-unused-function -O2 -CFLAGS= -g -Wall -Wno-unused-function -O3
+CFLAGS?= -g -Wall -Wno-unused-function -O2 +CFLAGS?= -g -Wall -Wno-unused-function -O3
WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
AR= ar AR= ar
DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC)