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biology/htslib: Update to 1.22

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Numerous fixes and enhancements
Changes: https://github.com/samtools/htslib/releases
Updated by: Hayzam Sherif
Tested all dependent ports, no breaking API/ABI changes

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2025-06-04 08:17:54 -05:00
parent 79814c7f28
commit c8a79b9a3b
3 changed files with 7 additions and 5 deletions
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4
biology/htslib/Makefile
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@ -1,5 +1,5 @@
PORTNAME= htslib PORTNAME= htslib
DISTVERSION= 1.21 DISTVERSION= 1.22
CATEGORIES= biology devel CATEGORIES= biology devel
# Github generated distfiles are incomplete, so use custom tarball # Github generated distfiles are incomplete, so use custom tarball
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/
@ -15,7 +15,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libdeflate.so:archivers/libdeflate LIB_DEPENDS= libdeflate.so:archivers/libdeflate
TEST_DEPENDS= bash:shells/bash TEST_DEPENDS= bash:shells/bash
USES= autoreconf cpe gmake localbase pathfix perl5 shebangfix tar:bzip2 USES= autoreconf cpe gmake localbase:ldflags pathfix perl5 shebangfix tar:bzip2
USE_PERL5= test USE_PERL5= test
USE_LDCONFIG= yes USE_LDCONFIG= yes

6
biology/htslib/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1727437235 TIMESTAMP = 1748951113
SHA256 (htslib-1.21.tar.bz2) = 84b510e735f4963641f26fd88c8abdee81ff4cb62168310ae716636aac0f1823 SHA256 (htslib-1.22.tar.bz2) = 6250c1df297db477516e60ac8df45ed75a652d1f25b0f37f12f5b17269eafde9
SIZE (htslib-1.21.tar.bz2) = 4781943 SIZE (htslib-1.22.tar.bz2) = 4830206

2
biology/htslib/pkg-plist
View File

@ -1,6 +1,7 @@
bin/annot-tsv bin/annot-tsv
bin/bgzip bin/bgzip
bin/htsfile bin/htsfile
bin/ref-cache
bin/tabix bin/tabix
include/htslib/bgzf.h include/htslib/bgzf.h
include/htslib/cram.h include/htslib/cram.h
@ -38,6 +39,7 @@ libdata/pkgconfig/htslib.pc
share/man/man1/annot-tsv.1.gz share/man/man1/annot-tsv.1.gz
share/man/man1/bgzip.1.gz share/man/man1/bgzip.1.gz
share/man/man1/htsfile.1.gz share/man/man1/htsfile.1.gz
share/man/man1/ref-cache.1.gz
share/man/man1/tabix.1.gz share/man/man1/tabix.1.gz
share/man/man5/faidx.5.gz share/man/man5/faidx.5.gz
share/man/man5/sam.5.gz share/man/man5/sam.5.gz