Commit Graph

65 Commits

Author SHA1 Message Date
Po-Chuan Hsieh 4d13b25916 textproc/xerces-c3: Update to 3.3.0
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=10510&version=12355023
2024-10-25 23:56:41 +08:00
Po-Chuan Hsieh b90b53dcb2 biology/libsbml: Update to 5.20.4
Changes:	https://github.com/sbmlteam/libsbml/releases
2024-09-09 02:36:57 +08:00
Daniel Engberg fee36575d6 biology/libsbml: Fix build with libxml2 2.12.0+
PR:		279752
Obtained from:	https://github.com/sbmlteam/libsbml/commit/a3e217851f18d3c5e8e2b0082fb98176738491e8
2024-06-18 12:05:09 +08:00
Po-Chuan Hsieh 4c14d7a290 biology/libsbml: Update to 5.20.2
Changes:	https://github.com/sbmlteam/libsbml/releases
2023-09-30 08:44:19 +08:00
Rene Ladan 3d9a815d9c all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++ -DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable -Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi -Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings -Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x -MT _quickfix_la-QuickfixPython.lo -MD -MP -MF .deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o .libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean '-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
2023-06-27 21:34:34 +02:00
Po-Chuan Hsieh f98de8beb0 biology/libsbml: Update to 5.20.0
- Update MASTER_SITES
- Update WWW
- Sort PLIST

Changes:	https://github.com/sbmlteam/libsbml/releases
2023-05-27 12:07:11 +08:00
Po-Chuan Hsieh 02db5c97dd biology/libsbml: Update WWW and clean up pkg-descr 2023-04-06 01:29:43 +08:00
Dima Panov 4dc157dfe6 biology/libsbml: unbreak build after 18c6e18276 (+)
Changes in framework need adjustment for declared options.

*_USE=ruby now became as *_USES=ruby

Approved by:	portmgr blanket
2023-01-18 17:47:24 +03:00
Stefan Eßer fb16dfecae Remove WWW entries moved into port Makefiles
Commit b7f05445c0 has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2022-09-07 23:58:51 +02:00
Stefan Eßer b7f05445c0 Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
2022-09-07 23:10:59 +02:00
Tobias C. Berner 37526bbd4e biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
2022-07-20 16:20:57 +02:00
Charlie Li d63665f7cd textproc/libxml2: bump all LIB_DEPENDS consumers
This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
2022-04-10 15:11:41 -04:00
Matthias Fechner 247c7db751 textproc/libxml2: bump all dependencies
This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd7
2022-03-26 09:27:27 +01:00
Po-Chuan Hsieh 5412e0a5e4 biology/libsbml: Update WWW 2022-02-28 20:45:56 +08:00
Po-Chuan Hsieh 8ad9338b22 biology/libsbml: Fix build with Python 3.10
Obtained from:	https://github.com/sbmlteam/libsbml/commit/4f01a15fde1d8afa9eaffb4c13dfc83a3404f183 (based on)
2021-11-02 05:28:40 +08:00
Dmitry Marakasov 893daf4fbc biology/libsbml: limit supported python versions
File "/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.19.0/src/bindings/python/doc-converter/rewrite_pydoc.py", line 121, in <module>
    from formatter import NullWriter, AbstractFormatter
ModuleNotFoundError: No module named 'formatter'

Approved by:	portmgr blanket
2021-11-01 18:28:24 +03:00
Po-Chuan Hsieh f747a647a1 biology/libsbml: Rename LIBXML option to LIBXML2 2021-05-12 05:46:56 +08:00
Mathieu Arnold 305f148f48 Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
Sunpoet Po-Chuan Hsieh 6b24a39b63 Set CMAKE options explicitly 2020-12-20 15:23:50 +00:00
Sunpoet Po-Chuan Hsieh cf864357a8 Add EXPAT, LIBXML and XERCES options
It allows choosing XML parser library.
2020-12-19 20:05:55 +00:00
Sunpoet Po-Chuan Hsieh 1b255e1ef8 Update to 5.19.0
Changes:	https://github.com/sbmlteam/libsbml/releases
2020-12-10 21:30:19 +00:00
Sunpoet Po-Chuan Hsieh 4453cd341c Convert REINPLACE_CMD to patch file 2020-09-29 18:23:04 +00:00
Sunpoet Po-Chuan Hsieh 7d33b22118 Update PYTHON option to use Python 3 2020-09-27 19:30:20 +00:00
Sunpoet Po-Chuan Hsieh cb333cf1ec Move devel/swig30 to devel/swig and update to 4.0.1
- Do not silence installation message
- Update dependent ports:
  - Fix build with swig 4.0.1
  - Update *_DEPENDS
  - Remove BINARY_ALIAS

Changes:	http://www.swig.org/news.php
PR:		246613
Exp-run by:	antoine
2020-06-17 18:17:45 +00:00
Sunpoet Po-Chuan Hsieh 32be5bcc79 Clean up Makefile 2020-02-08 19:01:40 +00:00
Sunpoet Po-Chuan Hsieh 47c6c8bc57 Use USES=pathfix
- Add USES=gnome
- Use = instead of += for PLIST_SUB
- Use CMAKE_BOOL
- Cosmetic change
- Take maintainership
2019-06-22 21:48:14 +00:00
Wen Heping 6779cec238 - Update to 5.18.0 2019-05-20 09:12:41 +00:00
Tobias C. Berner 707c6bf295 Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
2018-12-25 20:25:39 +00:00
Tobias Kortkamp 862bfe924c biology/libsbml: Fix build with Clang 6
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:41:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLDocument.h:298:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLTransforms.h:48:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/FunctionDefinition.h:129:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBO.h:207:
/usr/include/c++/v1/map:629:15: error: object of type 'std::__1::pair<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>' cannot be assigned because its copy assignment operator is implicitly deleted
        {__nc = __v.__cc; return *this;}
              ^

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/libsbml-5.17.0.log
2018-08-25 03:31:43 +00:00
Mark Linimon 3d51529fe8 Mark as broken with clang6 after r473289. 2018-08-24 06:24:30 +00:00
Wen Heping 18d5a5524f - Update to 5.17.0 2018-06-25 01:37:52 +00:00
Wen Heping 8cc87f5485 - Update to 5.16.0 2018-01-01 08:24:53 +00:00
Baptiste Daroussin 2e9911f602 Switch from swig 2.0 to swig 3.0 2017-12-20 19:34:11 +00:00
Mathieu Arnold 551be3c723 Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
  current python flavor.  It can be used in dependency lines when the
  port itself is not python flavored.  For example, deskutils/calibre.

  By default, all the flavors are generated.  To only generate flavors
  for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
  BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.

  In all the ports with Python dependencies, the *_DEPENDS entries MUST
  end with the flavor so that the framework knows which to build/use.
  This is done by appending '@${PY_FLAVOR}' after the origin (or
  @${FLAVOR} if in a Python module with Python flavors, as the content
  will be the same).  For example:

    RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}

PR:		223071
Reviewed by:	portmgr, python
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D12464
2017-11-30 15:50:30 +00:00
Wen Heping b60a5c5e56 - Update to 5.15.0 2017-05-18 02:22:18 +00:00
Mathieu Arnold d26ef18700 Cleanup no longer needed CHMOD usage after r424898.
PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
2016-11-02 22:45:14 +00:00
Mikhail Teterin ce33766b1f Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:
https://groups.google.com/forum/#!topic/sbml-discuss/OEq_49c_X78

Notified by:	portscout
2016-04-16 01:54:15 +00:00
Mathieu Arnold 7f4572eae4 Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat:	portmgr
Sponsored by:	Absolight
2016-04-01 13:29:15 +00:00
Wen Heping 389b0168c4 - Update to 5.12.0 2016-03-27 07:09:34 +00:00
Dmitry Marakasov 1cda3966bb - Add LICENSE_FILE
- Switch to options helpers
2015-10-14 23:51:20 +00:00
Raphael Kubo da Costa 3705667db1 Switch to USES=iconv:build.
The port does not use iconv on its own, the only dependency comes via
libxml2, which has one header that includes iconv.h.
2015-08-25 13:15:17 +00:00
Wen Heping e277ea8c7b - Update to 5.11.4 2015-05-12 08:58:14 +00:00
Marcus von Appen 49cb3686eb - Convert USE_PYTHON -> USES leftovers missed in the previous commits
Spotted by:	antoine
With hat:	python
2015-01-04 08:23:23 +00:00
Wen Heping 6453105b31 - Update to 5.11.0
PR:		196377
Submitted by:	koue@chaosophia.net
2014-12-30 12:57:53 +00:00
Baptiste Daroussin 99a3e8559c Cleanup plist 2014-10-20 07:10:48 +00:00
Wen Heping f6912d8c17 - Update to 5.10.2
PR:		192198
Submitted by:	tkato432@yahoo.com
2014-08-10 06:21:53 +00:00
Marcus von Appen 900db324a3 Convert the Python framework bits to USES=python.
Please use USES=python instead of USE_PYTHON.

  USE_PYTHON=yes becomes USES=python
  USE_PYTHON=2.7+ becomes USES=python:2.7+
  USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build
  ...

A new PYTHON_FEATURES variable was added, which enables certain features for a
port and replaces some knobs at the same time;

  PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS
  PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST
  PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK
  PYTHON_FEATURES=noegginfo replaces PYDISTUTILS_NOEGGINFO
  PYTHON_FEATURES=concurrent replaces PYTHON_CONCURRENT_INSTALL
  PYTHON_FEATURES=pythonprefix replaces USE_PYTHON_PREFIX

Some knobs have been deprecated and are to be removed in the near future:

  PYTHON_MASTER_SITES - use MASTER_SITE_PYTHON instead
  PYTHON_PKGNAMESUFFIX - use PYTHON_PKGNAMEPREFIX instead
  PYDISTUTILS_INSTALLNOSINGLE - deprecated without replacement

Some knobs have been removed completely:

  PYTHON_MASTER_SITE_SUBDIR
  PYTHON_DISTNAME
  PYTHON_WRKSRC

Several variables specific to the Python framework are no longer passed to the
build environment to avoid polluting dependency builds.

  PYTHON_VERSION is not passed to .MAKEFLAGS anymore
  PYTHON_DEFAULT_VERSION,
  PYTHON_DEFAULT_PORTVERSION and
  PYTHONBASE are not passed to the make environment anymore

The conversion required a couple of ports to be updated to fit the changes and
new requirements. Those included "bsd.python.mk" directly or contained checks
in places, for which the USES framework would fail to provide correct values.

Python modules directly using the upstream Python package (such as py-tkinter
or py-sqlite3) were updated to avoid using the now unnecessary and remmoved
knobs from "bsd.python.mk".

Phabric:	D399
exp-run:	167368 192357
PR:		167368 192357
Reviewed by:	antoine, wg
Exp-run award:	antoine
With hat:	python@
Approved by:	portmgr
2014-08-09 15:44:27 +00:00
Wen Heping 06e1e7ab8b - Update to 5.10.0 2014-05-13 07:04:17 +00:00
Wen Heping f6d9105f6a - Update to 5.9.0 [1]
- Stage support [1]
- Add LICENSE [1]
- Reset maintainer to port@

PR:		188554 [1]
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
2014-05-13 02:46:25 +00:00
Niclas Zeising 39fc32e828 The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
as some drivers and utilities.

Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due
to xserver version change.

Apart from these updates, the way shared libraries are handled has been
changed for all xorg ports, as well as libxml2 and freetype, which means
ltverhack is gone and as a consequence shared libraries have been bumped.
The plan is that this change will make library bumps less likely in the
future.
All affected ports have had their portrevisions bumped as a consequence of
this.

Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT.

Update instructions, hardware support, and more notes can be found on
https://wiki.freebsd.org/Graphics

Thanks to:	all testers, bdrewery and the FreeBSD x11@ team
exp-run by:	bdrewery [1]
PR:		ports/187602 [1]
Approved by:	portmgr (bdrewery), core (jhb)
2014-04-16 18:28:47 +00:00