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9928 Commits

Author SHA1 Message Date
Po-Chuan Hsieh ba5a01ee50 science/netcdf: Update to 4.10.1 
Changes:	https://github.com/Unidata/netcdf-c/releases
 2026-07-12 12:51:20 +08:00
Po-Chuan Hsieh 1c9ff3f1e4 science/py-libpysal: Update to 4.15.0 
Changes:	https://github.com/pysal/libpysal/releases
 2026-07-11 20:21:24 +08:00
Po-Chuan Hsieh 6e5bbeffcf science/py-esda: Add NOTEBOOKS option 2026-07-11 20:21:24 +08:00
Po-Chuan Hsieh dc62791cb7 science/pnetcdf: Update to 1.15.0 
- Remove my LOCAL from MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Parallel-NetCDF/PnetCDF/blob/master/RELEASE_NOTES
		https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/tree/master/Release_notes
 2026-07-11 20:20:52 +08:00
Yuri Victorovich 12711c01d4 science/nest: Unbreak by fixing plist 
Reported by:	fallout
 2026-07-10 19:55:21 -07:00
Yuri Victorovich 9536e104a9 science/py-libgetar: Unbreak by dropping py-breathe to avoid numpy conflict 
Reported by:	fallout
 2026-07-10 18:00:12 -07:00
Yuri Victorovich b3fec647da science/py-phonopy: Unbreak by wildcarded .so in strip targets 
Reported by:	fallout
 2026-07-10 17:24:33 -07:00
Yuri Victorovich 1c349bee29 science/py-icet: Unbreak by sildcarded .so in strip target. 
Reported by:	fallout
 2026-07-10 17:24:33 -07:00
Yuri Victorovich d4600726b0 science/cantera: Unbreak by fixing wheel-filename mismatch via SConscript sentinel/glob 
Also: Python ABI parameterized in strip target and pkg-plist.
 2026-07-10 17:24:33 -07:00
Yuri Victorovich 2e61cbebd9 science/neko: Unbreak by making Python available at configure/build time 
Reported by:	fallout
 2026-07-10 11:14:57 -07:00
Dag-Erling Smørgrav 4ea3547132 various: Bump go ports for go-1.25.12 / 1.26.5 2026-07-10 09:54:15 +02:00
Fernando Apesteguía 4f7f361b8f science/afni: Update to 26.2.01 2026-07-09 19:09:22 +02:00
Yuri Victorovich cce58f536a science/py-scipy-stubs: New port: Type annotations for SciPy 2026-07-08 22:20:15 -07:00
Piotr Kubaj 00a1c67ecc science/py-scipy: fix build on powerpc64le on CURRENT 
Same as other long double-related issues, e.g. bash or coreutils.
 2026-07-08 20:37:21 +02:00
Yuri Victorovich cb5a0fcaa6 science/siesta: update 4.1.5 → 5.4.2 2026-07-08 09:26:29 -07:00
Yuri Victorovich d937e8844c science/plumed: update 2.10.0 → 2.10.1 2026-07-08 09:26:28 -07:00
Po-Chuan Hsieh 5305f8d3ee science/py-segregation: Update to 2.5.5 
Changes:	https://github.com/pysal/segregation/releases
 2026-07-08 21:32:15 +08:00
Po-Chuan Hsieh 64c38a0a86 science/py-esda: Update to 2.10.0 
Changes:	https://github.com/pysal/esda/releases
 2026-07-08 21:32:15 +08:00
Po-Chuan Hsieh b2dcd16887 science/py-asdf: Update to 5.3.1 
Changes:	https://github.com/asdf-format/asdf/releases
 2026-07-08 21:32:14 +08:00
Po-Chuan Hsieh 1d7655ff75 science/netcdf-fortran: Update to 4.6.3 
Changes:	https://github.com/Unidata/netcdf-fortran/releases
 2026-07-08 21:30:40 +08:00
Po-Chuan Hsieh cb990cc73a science/cdo: Update to 2.6.3 
Changes:	https://code.mpimet.mpg.de/projects/cdo/news
 2026-07-08 21:30:39 +08:00
Yuri Victorovich 247b1423ec science/xdrawchem: update 1.11.1-2 → 2.0.1 2026-07-07 18:21:28 -07:00
Yuri Victorovich 4c5e30f12f science/hepmc3: update 3.3.0 → 3.3.1 2026-07-07 17:29:24 -07:00
Yuri Victorovich 97065ffb28 science/gromacs: update 2026.2 → 2026.3 2026-07-07 17:23:40 -07:00
Hiroo Ono 62baa121c8 science/py-phonopy: fix build with python3.12 
PR:		272556
Reported by:	fallout
 2026-07-06 19:36:03 -07:00
Yuri Victorovich 74591871ed science/py-libgetar: Fix build with numpy-2.x 
Reported by:	fallout
 2026-07-06 19:36:03 -07:00
Yuri Victorovich fa1c8395c8 cience/quantum-espresso: Add test dependency 2026-07-06 19:36:03 -07:00
Yuri Victorovich c3f806d4fa science/gpaw-setups: Improve install target 2026-07-06 12:35:58 -07:00
Yuri Victorovich 755b873197 math/blasfeo: update 0.1.4.2 → 0.1.4.3 2026-07-06 08:05:17 -07:00
Robert Clausecker 0b65920ade science/py-pyked: fix wrong portname in LIB_DEPENDS 
yuri, please pay more attention; you're making a lot of random
little errors like these lately.

Fixes:		df3f177364
 2026-07-06 10:52:33 +02:00
Muhammad Moinur Rahman a4030a0e46 science/py-mdp: Update version 3.5=>3.6 
- Mark DEPRECATED
- No Upstream activity since 2024
- No consumers in the ports tree
- Set EXPIRATION_DATE 2026-08-31

Changelog: https://github.com/mdp-toolkit/mdp-toolkit/releases/tag/MDP-3.6
 2026-07-05 20:58:41 +02:00
Rodrigo Osorio 1ba144cfa2 science/p5-Geo-WebService-Elevation-USGS: update 0.201 -> 0.202 
Changelog: https://metacpan.org/dist/Geo-WebService-Elevation-USGS/changes
 2026-07-04 11:07:38 +02:00
Fernando Apesteguía 31df456d98 science/afni: Update to 26.2.00 2026-07-03 20:20:24 +02:00
Yuri Victorovich df3f177364 science/py-pyked: update 0.4.1-16 → 0.5.0 2026-07-02 23:31:11 -07:00
Rene Ladan 88271a10b5 all: schedule for removal on 2026-09-15 for lang/cython0 2026-07-02 22:19:17 +02:00
Dag-Erling Smørgrav a816f578c1 science/py-tweedledum: update 1.1.1-20221123 → 1.2.0 
PR:	294633
 2026-07-02 10:53:51 -07:00
Max Brazhnikov bbb9a6dc2d KDE: Update KDE Gear to 26.04.3 
Announcement: https://kde.org/announcements/gear/26.04.3/
 2026-07-02 15:16:28 +03:00
Yuri Victorovich 0fe6c2ea88 science/amrex: update 26.06 → 26.07 2026-07-02 02:31:54 -07:00
Yuri Victorovich 1b90374fd0 science/{,py-}ncrystal: update 4.4.4 → 4.4.6 2026-07-01 22:33:19 -07:00
Yuri Victorovich f80702207e science/py-cirq-ionq: update 1.6.1 → 1.7.0 2026-07-01 22:17:29 -07:00
Yuri Victorovich f112d73459 science/py-cirq-web: update 1.6.1 → 1.7.0 2026-07-01 22:15:55 -07:00
Yuri Victorovich 966d491931 science/py-cirq-google: update 1.6.1 → 1.7.0 2026-07-01 22:15:54 -07:00
Yuri Victorovich d25f820d6a science/py-cirq-core: update 1.6.1 → 1.7.0 2026-07-01 22:15:54 -07:00
Yuri Victorovich 01e30dd105 science/py-cirq-aqt: update 1.6.1 → 1.7.0 2026-07-01 22:15:53 -07:00
Yuri Victorovich be46f6ae74 science/py-cirq-pasqal: update 1.6.1 → 1.7.0 2026-07-01 22:15:53 -07:00
Rene Ladan d13665dbca science/opensim-core: expire on 2026-09-30 for devel/swig40 2026-06-30 23:46:43 +02:00
Jason W. Bacon 3c4e84e29e science/orthanc-postgresql: Update to 10.2 
Improve internal error handling.
Changes: https://orthanc.uclouvain.be/hg/orthanc-databases/file/\
	    tip/PostgreSQL/NEWS
 2026-06-30 07:15:37 -05:00
Yuri Victorovich 97a413ca30 science/amrex: Add options 2026-06-30 00:12:15 -07:00
Yuri Victorovich 1d9ec9f4f1 science/amrex: New port: AMReX: Software Framework for Block Structured AMR 2026-06-29 12:29:56 -07:00
Yuri Victorovich 31b946d4b0 science/py-phonors: New port: Rust kernels for phonopy and phono3py 2026-06-29 12:29:56 -07:00