059ebf3da7
biology/hyphy: Update to version 2.5.27
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https://github.com/veg/hyphy/releases/tag/2.5.27
2021-01-27 11:33:53 +00:00
3d9e4abbe0
biology/hyphy: Update to version 2.5.26
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https://github.com/veg/hyphy/releases/tag/2.5.26
2021-01-15 20:09:29 +00:00
56dac58885
biology/hyphy: Remove USES=compiler:openmp
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USES=compiler:openmp still forces building with GCC. This is no longer
necessary on tier 1 platforms, which have openmp in the base system.
PR: 247753, 252379
2021-01-11 17:54:42 +00:00
959aa35d1a
biology/hyphy: Update to version 2.5.25
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https://github.com/veg/hyphy/releases/tag/2.5.25
2021-01-11 02:51:29 +00:00
a2869b87e2
biology/hyphy: Update to version 2.5.24
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https://github.com/veg/hyphy/releases/tag/2.5.24
2020-12-20 20:21:52 +00:00
acaba2fd81
biology/hyphy: Update to version 2.5.23
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.23
2020-11-19 10:53:55 +00:00
9764ff1c09
biology/hyphy: Update to version 2.5.22
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.22hf
2020-11-18 10:54:03 +00:00
c0b2681b80
biology/hyphy: Update to version 2.5.21
2020-10-30 14:05:47 +00:00
9c9a2cecb6
biology/hyphy: Update to version 2.5.20
2020-10-16 23:43:17 +00:00
520d533f8b
biology/hyphy: Update to version 2.5.19
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.19
2020-10-13 01:05:45 +00:00
3a2ec6d491
biology/hyphy: Update to version 2.5.18 and add AVX option
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The AVX option is off by default, because hyphy will crash on systems
without advanced vector extensions support.
2020-09-02 17:47:10 +00:00
9c4faf08b0
biology/hyphy: Update to version 2.5.17
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Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.16
https://github.com/veg/hyphy/releases/tag/2.5.17
2020-08-20 16:15:22 +00:00
26bcffc642
biology/hyphy: Update to version 2.5.15
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.15
2020-06-28 16:40:33 +00:00
e677d43938
biology/hyphy: Update to version 2.5.14
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.14
2020-05-30 19:39:11 +00:00
e743846843
biology/hyphy: Update to version 2.5.12
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Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.11
https://github.com/veg/hyphy/releases/tag/2.5.12
2020-05-03 02:08:19 +00:00
c20d5fb7fb
biology/hyphy: Update to version 2.5.10
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Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.9
https://github.com/veg/hyphy/releases/tag/2.5.10
2020-04-25 00:33:16 +00:00
263987970a
biology/hyphy: Update to version 2.5.8
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.8
2020-03-28 12:27:11 +00:00
22c22dff73
biology/hyphy: Update to version 2.5.7
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.7
2020-03-20 01:30:46 +00:00
fe591bd88b
biology/hyphy: Update to version 2.5.6
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.6
2020-03-17 18:17:16 +00:00
aef8ee9db0
biology/hyphy: Update to version 2.5.5
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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.5
2020-03-02 01:31:56 +00:00
6bb8f81a44
biology/hyphy: Update to version 2.5.4
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Upstream changes: https://github.com/veg/hyphy/releases
2020-02-21 12:22:17 +00:00
ea8c8ec7da
Bump PORTREVISION for ports depending on the canonical version of GCC
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as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
2019-07-26 20:46:53 +00:00
707c6bf295
Change cmake default behaviour to outsource.
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Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
2018-12-25 20:25:39 +00:00
a9f015d155
Bump PORTREVISION for ports depending on the canonical version of GCC
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defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
2018-12-12 01:35:33 +00:00
6c672c455f
biology/hyphy: Update to version 2.3.14.16
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This pulls in fixes after the 2.3.14 release.
Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14
Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e
2018-10-20 12:21:15 +00:00
f6900327d3
biology/hyphy: Update to version 2.3.13
2018-05-22 22:55:18 +00:00
b19510413c
biology/hyphy: Bump PORTREVISION after upstream rerolled release
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Also, remove patch that upstream incorporated in new tarball.
Upstream issue: https://github.com/veg/hyphy/issues/796
2018-05-14 16:52:40 +00:00
e59e3784bd
New port, biology/hyphy: Hypothesis testing using Phylogenies
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WWW: http://www.hyphy.org/
2018-05-11 00:05:16 +00:00
Joseph Mingrone
Gerald Pfeifer
Tobias C. Berner