Commit Graph

12 Commits

Author SHA1 Message Date
Jason W. Bacon fb3f006dcf biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
2020-08-03 17:40:04 +00:00
Jan Beich 701aa3bcf8 devel/boost-*: update to 1.72.0
Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
2019-12-11 17:53:48 +00:00
Jason W. Bacon b85fc34eb7 biology/unanimity and dependencies: Flag as no longer open source
PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs.
2019-11-24 15:53:00 +00:00
Jan Beich befa71e0f3 devel/boost-*: update to 1.71.0
Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
2019-08-19 15:35:27 +00:00
Gerald Pfeifer ea8c8ec7da Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2019-07-26 20:46:53 +00:00
Jan Beich 9b21a3a084 devel/boost-*: update to 1.70.0
Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
2019-04-12 06:36:31 +00:00
Jason W. Bacon 4179f088a3 biology/pbbam: Upgrade to 0.18.0 release
In preparation for unanimity upgrade
2019-02-19 23:03:41 +00:00
Gerald Pfeifer a9f015d155 Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2018-12-12 01:35:33 +00:00
Jan Beich 7c879267dc devel/boost-*: update to 1.69.0
Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645
2018-12-12 00:15:49 +00:00
Mark Linimon 2e7f27934a More precisely specify USES=compiler to fix build on gcc-based
platforms such as powerpc64.

Tested on powerpc64, amd64.

Approved by:	portmgr (tier-2 blanket)
2018-09-18 08:14:23 +00:00
Jan Beich 0b055d47f2 devel/boost-*: update to 1.68.0
- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
2018-08-09 06:58:30 +00:00
Jason W. Bacon 96c9c54cd4 biology/pbbam: PacBio BAM C++ library, with SWIG bindings
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15154
2018-04-23 16:08:21 +00:00