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10 Commits

Author SHA1 Message Date
Alexey Dokuchaev 907a4eb7ab Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1). 2020-05-27 11:59:13 +00:00
Mathieu Arnold e1bfdfbe56 Add DOCS options to ports that should have one. 
Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
 2018-09-10 13:14:50 +00:00
Alex Kozlov 43a22bb0dd - Fix various distinfo errors 
- Remove unused USE_* knobs
- Fix typos in USE_* knobs
- Remove empty lines after .include <bsd.port.mk>

Approved by:	portmgr (bapt)
Differential Revision:	https://reviews.freebsd.org/D911
 2014-10-16 08:55:30 +00:00
Kurt Jaeger 690da7ea38 update ports: 
biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
 2014-08-23 18:04:58 +00:00
Antoine Brodin bba40a1244 Replace maintainer's email address with one that seems to work 
With hat:	portmgr
 2014-05-10 18:07:52 +00:00
Adam Weinberger 955d37365b Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
Baptiste Daroussin 7055ff02f1 Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 15:55:44 +00:00
Martin Wilke a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Edwin Groothuis ea7995670b Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
Edwin Groothuis 5081af2c64 New port: biology/consed viewing and editing workbench for sequence 
assembly

	Consed is a tool for viewing, editing, and finishing sequence
	assemblies.

	The port is constituted of 4 parts:
	biology/phred: base caller with quality evaluation
	biology/phrap: sequence assembler for shotgun sequencing
	biology/consed: workbench
	biology/phd2fasta: small utility

	All these can be used separately; however, most function
	of consed depends on the others.

	Although these programs are licensed freely for academic
	and nonprofit purposes, users have to contact the authors
	to get the softwares.
	Phred (including phd2fasta) and phrap are emailed,
	and consed can be downloaded to a restricted IP address.
	For commercial users, the licensing fee is ca. $10,000 at
	the time of writing.

PR:		ports/118548
Submitted by:	Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
 2008-05-24 07:04:45 +00:00