Commit Graph

7 Commits

Author SHA1 Message Date
Jason W. Bacon d139fe0bb6 biology/star: Drop dependency on gcc
Replace compiler:openmp with compiler:c++11-lang and localbase

PR:             port/247753, ports/252379
2021-01-11 17:39:52 +00:00
Jason W. Bacon 16d588cd0c biology/star: Upgrade to 2.7.3a
Several compatibility and feature enhancements
2020-04-09 12:43:03 +00:00
Jason W. Bacon c904df3468 biology/star: Upgrade to 2.7.2d
Fix chimeric output bug.

Numerous other minor fixes and enhancements since 2.7.0.

Reported by:    portscout
2019-10-06 22:18:31 +00:00
Gerald Pfeifer ea8c8ec7da Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2019-07-26 20:46:53 +00:00
Jason W. Bacon 70dde62191 biology/star: Force newer GCC on platforms with GCC 4.2 base
PR:             237700
Submitted by:   pkubaj
2019-05-02 00:39:51 +00:00
Jason W. Bacon c8844419a0 biology/star: Modify PKGBASE to avoid conflict with archivers/star 2019-04-23 15:03:29 +00:00
Jason W. Bacon d3e770598b biology/star: Spliced Transcripts Alignment to a Reference
STAR is an extremely fast RNA-seq aligner, an alternative to tophat2,
hisat2, bowtie, subread, etc.
2019-04-21 20:30:55 +00:00