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3 Commits

Author SHA1 Message Date
Piotr Kubaj 29410b915b biology/tabixpp: fix build on GCC architectures 
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -fPIC -c tabix.cpp -Ihtslib
In file included from /usr/local/include/htslib/hts.h:37,
                 from /usr/local/include/htslib/tbx.h:30,
                 from tabix.hpp:5,
                 from tabix.cpp:1:
/usr/local/include/htslib/kstring.h: In function 'int ks_resize(kstring_t*, size_t)':
/usr/local/include/htslib/kstring.h:149: error: 'SIZE_MAX' was not declared in this scope
tabix.cpp: In constructor 'Tabix::Tabix(std::string&)':
tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263)
tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263)
 2020-11-23 16:13:15 +00:00
Jason W. Bacon fb3f006dcf biology/htslib: Upgrade to 1.10.2 
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
 2020-08-03 17:40:04 +00:00
Jason W. Bacon 00e9878dd9 biology/tabixpp: C++ wrapper to tabix indexer 
Reviewed by:    mat
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14977
 2018-04-14 23:52:16 +00:00