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Author SHA1 Message Date
Tobias C. Berner b87bceff50 Update KDE's App Bundle to 19.12.1 
January 09, 2020. Over 120 individual programs plus dozens of programmer
libraries and feature plugins are released simultaneously as part of KDE’s
release service.

Today they all get new bugfix source releases.

Release Notes:	https://community.kde.org/Releases/19.12_Release_Notes
Changelog: 	https://kde.org/announcements/changelog-releases.php?version=19.12.1
 2020-01-09 22:28:39 +00:00
Sunpoet Po-Chuan Hsieh 7ba879a2b6 Update to 0.3.0 
Changes:	https://github.com/facebookresearch/nevergrad/releases
		https://github.com/facebookresearch/nevergrad/blob/master/CHANGELOG.md
 2020-01-09 17:53:14 +00:00
TAKATSU Tomonari 40c6b34aef - Update to 0.1.9 2020-01-09 17:19:36 +00:00
Piotr Kubaj 48d8f67d1d math/cln: fix build on GCC architectures 
Use new GCC to fix build after last update:
../include/cln/number.h: In function 'const type& cln::the(const cln::cl_number&)':
../include/cln/number.h:261: error: there are no arguments to 'static_assert' that depend on a template parameter, so a declaration of 'static_assert' must be available
../include/cln/number.h:261: error: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
 2020-01-07 11:33:47 +00:00
Joseph Mingrone ced1e88d5e editors/emacs-devel: Update to latest master branch commit, 4f2b415 
This update includes an Emacs major version change from 27.0.50 to 28.0.50.
Ports that may depend on editors/emacs-devel must chase this update
with a PORTREVISION bump.

Submitted by:	ashish (maintainer)
Differential Revision:	https://reviews.freebsd.org/D23012
 2020-01-07 04:55:40 +00:00
Sunpoet Po-Chuan Hsieh f1aae84264 Update to 2.7.1 
Changes:	https://github.com/pydata/numexpr/releases
		https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
 2020-01-06 14:44:41 +00:00
Adriaan de Groot 2faf41b4b1 Update devel/cmake to latest upstream release, 3.16.2 
This new release has support for the latest Boost, Objective-C
and various small improvements. The release notes are at:
	https://cmake.org/cmake/help/v3.16/release/3.16.html

Two ports could not be persuaded to build with this new release
(math/openmesh science/fleur) and are marked BROKEN. Other build
fixes have already been done in-tree.

Thanks antoine@ for the exp-runs (multiple).
Thanks tcberner@ for prep-work (most of the work, actually).

PR:		242254
 2020-01-06 12:57:03 +00:00
Yuri Victorovich 8b61a916fb math/nanoflann: GitHub regenerated the tarball for the same version 2020-01-06 03:30:26 +00:00
Yuri Victorovich 28a16c27f6 math/nanoflann: Not broken 
Erroneously labeled as BROKEN/unfetchable in rev.522132,
which may have been made during a period of intermittent connectivity problems.
 2020-01-06 03:07:39 +00:00
Stephen Montgomery-Smith f671c2f220 - Add option dependencies communications and mechanics. 
- Update to 20200106.
 2020-01-06 01:43:10 +00:00
Stephen Montgomery-Smith 535a489b18 - Resurrect port math/octave-forge-mechanics. 
- Bump portrevision.
 2020-01-06 01:39:20 +00:00
Stephen Montgomery-Smith a02b639055 - Resurrect ports math/octave-forge-communications. 
- Update to 1.2.2.
 2020-01-06 01:29:47 +00:00
Antoine Brodin dc9af20b3c Mark a few ports broken (unfetchable) 2020-01-05 10:26:04 +00:00
Yuri Victorovich 6a4357ba8d math/barvinok: Update 0.41.2 -> 0.41.3 
Reported by:	portscout
 2020-01-05 08:45:18 +00:00
Yuri Victorovich 691e53aea0 math/py-spot: Update 2.8.4 -> 2.8.5 
Reported by:	portscout
 2020-01-05 08:31:41 +00:00
Yuri Victorovich 9aa3542072 math/spot: Update 2.8.4 -> 2.8.5 
Reported by:	portscout
 2020-01-05 08:31:04 +00:00
Yuri Victorovich 31d89ed2e8 math/zegrapher: Update 3.0.2 -> 3.1 
Reported by:	portscout
 2020-01-05 08:19:45 +00:00
Matthias Andree 2e26d3323d graphics/ilmbase, graphics/openexr: upgrade to upstream v2.4.0 
graphics/gstreamer1-plugins-openexr: switch from C++98 to C++11 to
match new OpenEXR headers and unbreak compilation.

Bump PORTREVISION of all ports depending directly on either, based
on assessing INDEX-12 (bump_portrevision.pl -l (shallow) used).

Release Notes:
https://github.com/AcademySoftwareFoundation/openexr/releases/tag/v2.4.0

The update was deliberately deferred until after 2020Q1, and should
not be MFH'd back to it.
 2020-01-05 02:17:32 +00:00
Piotr Kubaj 21819b5e53 math/clrng: fix build on powerpc64 elfv2 
clang doesn't have ppu_intrinsics.h.

PR:		243036
Approved by:	jmd (maintainer)
 2020-01-04 20:14:11 +00:00
Yuri Victorovich 621dee1e14 math/cppad: Update 20200000.0 -> 20200000.1 2020-01-04 18:29:31 +00:00
Wen Heping 8717dae047 - Update to 1.5 2020-01-04 15:42:05 +00:00
Yuri Victorovich 4c187b3ffd math/hpipm: Update 0.1.0-80 -> 0.1.1 
Reported by:	portscout
 2020-01-04 10:15:47 +00:00
Wen Heping f53af99381 - Update to 1.3.6 2020-01-04 09:39:04 +00:00
Yuri Victorovich c16fc77352 math/geogram: Update 1.7.2 -> 1.7.3 
Reported by:	portscout
 2020-01-04 05:57:01 +00:00
Yuri Victorovich c3fc89e0b2 math/dbcsr: Update 1.1.0 -> 2.0.1 
Reported by:	portscout
 2020-01-04 05:43:23 +00:00
Yuri Victorovich 0608076b6c math/cppad: Update 20190200.5 -> 20200000.0 
Reported by:	portscout
 2020-01-04 05:38:22 +00:00
Yuri Victorovich acd7fb9dbd math/py-primme: Update 3.0 -> 3.0.1 
Reported by:	portscout
 2020-01-03 07:26:29 +00:00
Yuri Victorovich 9a47c9d351 math/primme: Update 3.0 -> 3.0.1 
Reported by:	portscout
 2020-01-03 07:25:54 +00:00
Devin Teske fb5cc75890 [New Port] math/R-cran-alabama: Constrained Nonlinear Optimization 
Augmented Lagrangian Adaptive Barrier Minimization Algorithm (ALABAMA) for
optimizing smooth nonlinear objective functions in R with constraints.

WWW: https://cran.r-project.org/web/packages/alabama/

Reviewed by:	mat, imp (previous revision)
Differential Revision:	https://reviews.freebsd.org/D22675
 2020-01-03 00:56:48 +00:00
Tobias C. Berner a457096f2e math/wxmaxima: Update to 20.01.1 
PR:		243037
Submitted by:	salvadore (maintainer)
 2020-01-02 20:03:35 +00:00
Devin Teske c0e7acf2f2 [New Port] math/R-cran-ADGofTest: Anderson-Darling GoF test 
Anderson-Darling GoF test in R with p-value calculation based on Marsaglia's
2004 paper "Evaluating the Anderson-Darling Distribution."

WWW: https://cran.r-project.org/web/packages/ADGofTest/

Reviewed by:	imp (mentor), mat (mentor)
Approved by:	imp (mentor), mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D22673
 2020-01-02 17:58:20 +00:00
Baptiste Daroussin 8e7bfc56cf Update to 0.9.1 2020-01-02 08:24:37 +00:00
Piotr Kubaj 5f582b73ab math/gretl: fix build on GCC architectures 
Since the last upgrade, gretl requires C11:
../lib/src/bhhh_max.c:37: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'Lval'

Fix this by adding USES=compiler:c11 and replacing OPENMP_USES=compiler:openmp with OPENMP_USE=GCC=yes. This sets the correct CC.

PR:		243027
Approved by:	yuri (maintainer)
 2020-01-01 22:50:04 +00:00
Tobias C. Berner 812e2c1c99 math/wxmaxima: Update to 19.12.4 
PR:		242928
Submitted by:	salvadore (maintainer)
 2020-01-01 22:07:26 +00:00
Sunpoet Po-Chuan Hsieh 320f27e7a7 Update to 1.1.26 
Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
 2020-01-01 16:30:48 +00:00
Rene Ladan 12f974ad28 Resurrect ports depending on devel/openmp. 
These ports will transition transparantly to openmp from base once
FreeBSD 12.0 reaches end-of-life.

Reported by:	jbeich [1] [2]

[1] https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html
[2] https://lists.freebsd.org/pipermail/svn-ports-head/2019-December/229648.html
 2020-01-01 11:46:08 +00:00
Rene Ladan f2aea6bcb5 Undeprecate math/blaze and science/chrono per https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html 2020-01-01 11:30:49 +00:00
Rene Ladan 87d7b8db4a Remove expired ports: 
2019-12-31 accessibility/linux-c6-atk: Superseded by CentOS 7
2019-12-31 audio/exaile-devel: this port is older than audio/exaile
2019-12-31 audio/linux-c6-alsa-lib: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-oss: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-pulseaudio: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-flac: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libaudiofile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libogg: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libsndfile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libvorbis: Superseded by CentOS 7
2019-12-31 audio/linux-c6-mikmod: Superseded by CentOS 7
2019-12-31 audio/linux-c6-nas-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-openal-soft: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-sdl_mixer: Superseded by CentOS 7
2019-12-31 databases/linux-c6-sqlite3: Superseded by CentOS 7
2019-12-31 databases/linux-oracle-instantclient-sqlplus: Depends on deprecated Centos 6 framework
2019-12-31 devel/linux-c6-dbus-glib: Superseded by CentOS 7
2019-12-31 devel/linux-c6-dbus-libs: Superseded by CentOS 7
2019-12-31 devel/linux-c6-devtools: Superseded by CentOS 7
2019-12-31 devel/linux-c6-elfutils-libelf: Superseded by CentOS 7
2019-12-31 devel/linux-c6-icu: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libgfortran: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libglade2: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libpciaccess: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsigc++20: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsoup: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libthai: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libunwind: Superseded by CentOS 7
2019-12-31 devel/linux-c6-nspr: Superseded by CentOS 7
2019-12-31 devel/linux-c6-qt47: Superseded by CentOS 7
2019-12-31 devel/linux-c6-sdl12: Superseded by CentOS 7
2019-12-31 dns/linux-c6-libasyncns: Superseded by CentOS 7
2019-12-31 emulators/linux_base-c6: Superseded by CentOS 7
2019-12-31 ftp/linux-c6-curl: Superseded by CentOS 7
2019-12-31 graphics/cptutils: depends on expired textproc/xml2
2019-12-31 graphics/linux-c6-cairo: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-dri: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-gdk-pixbuf2: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-glx-utils: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jasper: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jpeg: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-png: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_image: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_ttf: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-tiff: Superseded by CentOS 7
2019-12-31 lang/linux-c6-tcl85: Superseded by CentOS 7
2019-12-31 math/blazeiterative: Depends on expiring devel/openmp
2019-12-31 multimedia/linux-c6-libtheora: Superseded by CentOS 7
2019-12-31 multimedia/linux-c6-libv4l: Superseded by CentOS 7
2019-12-31 net/linux-c6-avahi-libs: Superseded by CentOS 7
2019-12-31 net/linux-c6-openldap: Superseded by CentOS 7
2019-12-31 net/linux-c6-tcp_wrappers-libs: Superseded by CentOS 7
2019-12-31 net/py-soappy: Please consider using net/py-zeep as upstream development is stalled  and recommends using another stalled library stud
2019-12-31 print/linux-c6-cups-libs: Superseded by CentOS 7
2019-12-31 science/openmx: Depends on expiring devel/openmp
2019-12-31 science/py-PyFR: Depends on expiring devel/openmp
2019-12-31 science/py-phono3py: Depends on expiring devel/openmp
2019-12-31 security/linux-c6-audit-libs: Superseded by CentOS 7
2019-12-31 security/linux-c6-cyrus-sasl2: Superseded by CentOS 7
2019-12-31 security/linux-c6-gnutls: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgcrypt: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgpg-error: Superseded by CentOS 7
2019-12-31 security/linux-c6-libssh2: Superseded by CentOS 7
2019-12-31 security/linux-c6-libtasn1: Superseded by CentOS 7
2019-12-31 security/linux-c6-nss: Superseded by CentOS 7
2019-12-31 security/linux-c6-openssl: Superseded by CentOS 7
2019-12-31 security/linux-c6-pam: Superseded by CentOS 7
2019-12-31 security/openssl: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which  time this port will update to 1.1.1 branch
2019-12-31 sysutils/eventlog: No longer supported by Balabit
2019-12-31 sysutils/linux-c6-lttng-ust: Superseded by CentOS 7
2019-12-31 sysutils/linux-c6-userspace-rcu: Superseded by CentOS 7
2019-12-31 sysutils/mkdesktop: defunct, will be deleted soon
2019-12-31 sysutils/syslog-ng311: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng315: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng317: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng318: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng319: No longer supported by Balabit
2019-12-31 textproc/linux-c6-aspell: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-expat: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-libxml2: Superseded by CentOS 7
2019-10-16 textproc/xml2: Unfetchable, unmaintained
2019-12-31 www/linux-c6-qt47-webkit: Superseded by CentOS 7
2019-12-31 x11/linux-c6-pixman: Superseded by CentOS 7
2019-12-31 x11/linux-c6-xorg-libs: Superseded by CentOS 7
2019-12-31 x11-fonts/linux-c6-fontconfig: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-gtk2: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-openmotif: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-pango: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-qt47-x11: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-tk85: Superseded by CentOS 7
 2019-12-31 17:00:29 +00:00
Rene Ladan 515028feb5 Chase devel/openmp expiration: 
- Sync expiration date of math/blaze with that of devel/openmp
- add science/chrono
 2019-12-31 15:43:20 +00:00
Koichiro Iwao dc936c406b multiple ports: Update MAINTAINER 
as he got FreeBSD.org account.

PR:		243002
Submitted by:	salvadore
 2019-12-31 13:02:42 +00:00
Yuri Victorovich 4d34bde3ae math/py-arviz: Update 0.5.1 -> 0.6.1 
Reported by:	portscout
 2019-12-31 03:38:02 +00:00
Yuri Victorovich ae5a03efc1 math/ensmallen: Update 2.10.5 -> 2.11.1 
Reported by:	portscout
 2019-12-31 02:16:08 +00:00
Antoine Brodin fbeb2a4fcd Unbreak bulk -a 2019-12-29 17:47:31 +00:00
Sunpoet Po-Chuan Hsieh 439a749df4 Update to 3.2.4 
Changes:	https://bitbucket.org/rpy2/rpy2/src/default/NEWS
		https://github.com/rpy2/rpy2/blob/master/NEWS
 2019-12-29 17:33:43 +00:00
Hiroki Sato e23bb909e7 - Update to 1.5.1. 
- Add -fPIC.
 2019-12-29 15:26:37 +00:00
Sunpoet Po-Chuan Hsieh c79626c06e Update to 0.15.4 
Changes:	https://github.com/openai/gym/blob/master/README.rst#whats-new
 2019-12-29 12:55:29 +00:00
Sunpoet Po-Chuan Hsieh 6272f4bbab Add py-hdbscan 0.8.24 
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with
Noise. Performs DBSCAN over varying epsilon values and integrates the result to
find a clustering that gives the best stability over epsilon. This allows
HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more
robust to parameter selection.

In practice this means that HDBSCAN returns a good clustering straight away with
little or no parameter tuning -- and the primary parameter, minimum cluster
size, is intuitive and easy to select.

HDBSCAN is ideal for exploratory data analysis; it's a fast and robust algorithm
that you can trust to return meaningful clusters (if there are any).

WWW: https://github.com/scikit-learn-contrib/hdbscan
 2019-12-29 12:46:11 +00:00
Jason E. Hale e7c2832946 math/qalculate: Update to 3.6.0 2019-12-28 20:36:12 +00:00
Jason E. Hale b216c218bc math/libqalculate: Update to 3.6.0 2019-12-28 20:35:22 +00:00
Wen Heping af1bc03413 - Update to 0.6.26 2019-12-28 13:05:05 +00:00