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117 Commits

Author SHA1 Message Date
Neel Chauhan da78ec3bd5 science/afni: Update to 21.0.07 2021-02-09 22:12:49 +00:00
Fernando Apesteguía 7ba6303023 science/afni: update to 21.0.6 
Reported by:	portscout
 2021-01-28 12:53:39 +00:00
Fernando Apesteguía 4c187ccf0d science/afni: update to 21.0.04 
Reported by:	portscout
 2021-01-20 09:27:22 +00:00
Fernando Apesteguía 25405a410d science/afni: update to 21.0.03 
Reported by:	portscout
 2021-01-17 08:37:41 +00:00
Fernando Apesteguía 1c66f4556c science/afni: update to 21.0.02 
Reported by:	portscout
 2021-01-13 14:23:48 +00:00
Fernando Apesteguía a6e755d84a science/afni: update to 21.0.00 
Reported by:	portscout
 2021-01-10 08:34:20 +00:00
Rene Ladan 75121688f1 science/afni: use math/qhull instead of expired math/qhull5 2021-01-04 15:33:02 +00:00
Fernando Apesteguía 80f4d4eac4 science/afni: update to 20.3.04 
Reported by:	portscout
 2020-12-27 13:06:51 +00:00
Fernando Apesteguía 0009019c9e science/afni: update to 20.3.03 
Reported by:	portscout
 2020-12-10 14:21:22 +00:00
Fernando Apesteguía 514b9098d2 science/afni: update to 20.3.02 
Reported by:	portscout
 2020-11-15 17:24:55 +00:00
Fernando Apesteguía 558a90b823 science/afni: update to 20.3.00 
Reported by:	portscout
 2020-10-04 12:07:53 +00:00
Fernando Apesteguía 172dd48ed6 science/afni: update to 20.2.19 
Reported by:	portscout
 2020-09-30 11:11:44 +00:00
Fernando Apesteguía fff3151ede science/afni: update to 20.2.18 
Reported by:	portscout
 2020-09-22 17:43:08 +00:00
Fernando Apesteguía 931b35f008 science/afni: update to 20.2.16 
Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"

Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:

"This program (3dAnatNudge) is old, obsolete, and not maintained!"

Reported by:	portscout
 2020-09-03 07:16:21 +00:00
Fernando Apesteguía 94e7535860 science/afni: update to 20.2.14 
Reported by:	portscout
 2020-08-22 17:32:58 +00:00
Fernando Apesteguía 5d90c6cf0c science/afni: update to 20.2.13 
Reported by:	portscout
 2020-08-20 15:57:33 +00:00
Fernando Apesteguía aeca496bae science/afni: update to 20.2.12 
Reported by:	portscout
 2020-08-19 10:46:33 +00:00
Fernando Apesteguía 169892aa75 science/afni: update to 20.2.11 
Reported by:	portscout
 2020-08-13 05:44:11 +00:00
Fernando Apesteguía 11bc923801 science/afni: update to 20.2.08 
Reported by:	portscout
 2020-08-03 17:02:26 +00:00
Fernando Apesteguía 47fb25430f science/afni: update to 20.2.06 
Reported by:	portscout
 2020-07-29 16:10:22 +00:00
Fernando Apesteguía fd88d2d196 science/afni: update to 20.2.05 
Reported by:	portscout
 2020-07-22 06:19:31 +00:00
Fernando Apesteguía 20a43c10f5 science/afni: update to 20.2.00 
Reported by:	portscout
 2020-07-08 10:40:39 +00:00
Fernando Apesteguía 823d5a544c science/afni: update to 20.1.18 
While here:

 * Reorder some variables
 * Remove duplicate USE_GL

Reported by:	portscout
 2020-07-02 06:55:49 +00:00
Kurt Jaeger 2761a50814 science/afni: update 20.1.16 -> 20.1.17 
Reported by:	portscout
 2020-06-21 14:43:48 +00:00
Fernando Apesteguía a81458aab9 science/afni: update to 20.1.16 
Reported by:	portscout
 2020-06-19 06:55:14 +00:00
Fernando Apesteguía f4083dd12a science/afni: update to 20.1.15 
Reported by:	portscout
 2020-06-16 06:31:27 +00:00
Fernando Apesteguía 8490de4e4e science/afni: Update to 20.1.14 
Reported by:	portscout
 2020-06-12 09:25:01 +00:00
Fernando Apesteguía 0ba90a8f6b science/afni: update to 20.1.13 
Reported by:	portscout
 2020-06-04 16:49:57 +00:00
Fernando Apesteguía 7242c635b7 science/afni: update to 20.1.12 
Reported by:	portscout
 2020-06-03 14:44:25 +00:00
Fernando Apesteguía 4feaac1390 science/afni: update to 20.1.11 
Reported by:	portscout
 2020-05-29 15:20:44 +00:00
Fernando Apesteguía f719ee5308 science/afni: update to 20.1.10 
Reported by:	portscout
 2020-05-27 16:11:57 +00:00
Fernando Apesteguía a349949e78 science/afni: update to 20.1.07 
Reported by:	portscout
 2020-05-26 05:45:24 +00:00
Mark Linimon ed8eb58a7e Mark as BROKEN on powerpc64: 
./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'

While here, remove OBE sparc64 stanza.
 2020-05-18 01:29:41 +00:00
Fernando Apesteguía 5dab8f551e science/afni: update to 20.1.06 
Reported by:	portscout
 2020-05-06 08:22:40 +00:00
Joseph Mingrone a0a98863ca math/R: Update to version 4.0.0 
Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
 2020-05-05 16:07:53 +00:00
Fernando Apesteguía d6efa80dea science/afni: update to 20.1.05 
Reported by:	portscout
 2020-04-30 15:03:16 +00:00
Fernando Apesteguía 18ff0acc6f science/afni: update to 20.1.03 
Reported by:	portscout
 2020-04-29 06:55:48 +00:00
Fernando Apesteguía 0c2302ecf6 science/afni: update to 20.1.02 
Reported by:	portscout
 2020-04-23 06:34:32 +00:00
Jason W. Bacon d01911ded0 science/afni: Upgrade to 20.1.02 
Added some common R-cran run dependencies
Removed obsolete reinplace patches
Improved do-install to better fit filesystem hierarchy
Releasing maintainership as I no longer work with any AFNI users

Reported by:    portscout
 2020-04-20 12:21:49 +00:00
Tobias C. Berner 4e896a50f8 math/gsl: update to 2.6 
- math/p5-Math-GSL does not seem to have any upstream activity to make it work with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
 2019-10-25 23:41:34 +00:00
Niclas Zeising 5dc8079437 science/afni: Remove dependency on libXp 
Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni
 2019-09-28 10:56:15 +00:00
Niclas Zeising 45ce25247b Deprecate x11/libXp, it is deprecated upstream 
Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt
 2019-09-27 16:18:58 +00:00
Sunpoet Po-Chuan Hsieh 6fa14b515d Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
Mathieu Arnold bc89cd3d2c Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
Gerald Pfeifer ea8c8ec7da Bump PORTREVISION for ports depending on the canonical version of GCC 
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
 2019-07-26 20:46:53 +00:00
Jason W. Bacon 6be8fa3bb2 science/afni: Upgrade to 19.1.20 
Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)
 2019-06-18 19:00:55 +00:00
Jason W. Bacon 97b12f97b4 science/afni: Upgrade to 19.1.18 
Minor bugfixes/enhancements
 2019-06-08 19:14:18 +00:00
Jason W. Bacon 144c4feb7d science/afni: Upgrade to 19.1.14 
Minor bug fixes and enhancements, some FreeBSD patches upstreamed
 2019-06-01 12:59:52 +00:00
Jason W. Bacon 73eb992926 science/afni: Upgrade to 19.1.10 
Rapid response from upstream on reported issue.  Additional patches to be
upstreamed in next release.
 2019-05-22 12:44:17 +00:00
Jason W. Bacon ade7919150 science/afni: Upgrade to 19.1.08 
Switch from personal dist snapshots to Github releases
Improve staging procedure to preserve results of build phase
Temporarily use bundled GLw pending fix of libglw port
 2019-05-20 19:35:57 +00:00