13009 Commits

Author SHA1 Message Date
Alex Dupre
f1a760140a Update to latest snapshot. 2019-02-12 09:14:58 +00:00
Baptiste Daroussin
f5f72d6ff9 Update to 0.8.5 2019-02-11 09:24:45 +00:00
Yuri Victorovich
232bb3f40f math/py-chaospy: Update 2.3.5 -> 3.0.3 2019-02-11 09:24:34 +00:00
Yuri Victorovich
b3869722fb math/py-z3-solver: Update 4.7.1 -> 4.8.4 2019-02-10 18:17:14 +00:00
Fernando Apesteguía
4b694a4117 math/dynare: update to 4.5.7
Bug fix release.

From ChangeLog: https://www.dynare.org/new-dynare-release/dynare-4.5.7-released

* The mex-file conducting the QZ decomposition erroneously applied the
  qz_criterium to the square absolute value of eigenvalues instead of
  the absolute value itself (as done in mjdgges.m and the AIM solver).

* In pathological cases, mode_compute=5 (newrat) might enter an infinite loop.

* discretionary_policy might erroneously state that the derivatives of the
  objective function are non-zero if there are NaN present.

* Dynare++, when conducting the QZ decomposition, erroneously applied the
  qz_criterium to the square absolute value of eigenvalues instead of the
  absolute value itself.

* Dynare++: IRFs were incorrectly computed.

* dynare_sensitivity did not display the figures of irf_calibration, it only
  stored them on the disk.

* Scatter plots generated by dynare_sensitivity did not correctly display
  LaTeX names.

* Parameter updating via steady state files did not correctly work in case
  of using [static]/[dynamic] equation tags.

* Memory leaks in k_order_pert (used by higher order stochastic simulations)
  could lead to crashes.

* Predetermined variables were not properly set when used in model local
  variables.

* Posterior moment computation did not correctly update the covariance matrix
  of exogenous shocks during posterior sampling.

* Dynare was crashing with a cryptic message if a non estimated parameter was
  initialized in the estimated_params_init block.

* The forecast command crashed if the model was declared as linear and
  contained deterministic exogenous variables.

* Block decomposition is broken when used in conjunction with varexo_det.

* The model was not correctly specified when identification was run without
  another stochastic command in the .mod file (e.g. estimation, stoch_simul, etc.).

* Realtime annualized shock decompositions added the wrong steady state value.

* mh_recover option crashed when using slice sampler.

* x-axis values in plots of moment restrictions were wrong for autocovariances.
2019-02-10 17:59:22 +00:00
Kurt Jaeger
2e4b46c66a math/wxmaxima: update 17.05.1 -> 19.01.2, lowercase, update MASTER_SITE, WWW
PR:		235245
Reported by:	g.s@arcor.de
Approved by:	nivit (maintainer timeout)
Relnotes:	https://github.com/wxMaxima-developers/wxmaxima/releases
2019-02-10 11:26:24 +00:00
Yuri Victorovich
9f5ff5d3f9 math/xtensor: Update 0.19.1 -> 0.19.3
Reported by:	portscout
2019-02-10 00:10:04 +00:00
Yuri Victorovich
67cc40f7da math/fricas: Update 1.3.4 -> 1.3.5
Reported by:	portscout
2019-02-09 22:31:58 +00:00
Yuri Victorovich
7455914383 math/py-cvxopt: Update 1.2.2 -> 1.2.3
Reported by:	portscout
2019-02-09 21:55:36 +00:00
Yuri Victorovich
7f18e84c97 math/cadabra2: Update 2.2.4 -> 2.2.5-5 2019-02-09 21:39:21 +00:00
Ruslan Makhmatkhanov
1f395301fb math/py-keras: fix runtime
- add missing dependencies to fix keras runtime
- add pkg-message to instruct user how to use keras in absence of tensorflow
- bump PORTREVISION

Approved by:	portmgr (blanket approval)
2019-02-09 12:10:58 +00:00
Ruslan Makhmatkhanov
0c2261aaff Keras Preprocessing is the data preprocessing and data augmentation module of
the Keras deep learning library. It provides utilities for working with image
data, text data, and sequence data.

WWW: https://github.com/keras-team/keras-preprocessing
2019-02-09 11:54:12 +00:00
Ruslan Makhmatkhanov
3cb18ec9cc This is a Keras Applications module of the Keras deep learning library.
It provides model definitions and pre-trained weights for a number of popular
archictures, such as VGG16, ResNet50, Xception, MobileNet, and more.

WWW: https://github.com/keras-team/keras-applications
2019-02-09 11:53:43 +00:00
Tobias Kortkamp
648c41713e New ports: math/gfan, math/gfanlib
Gfan is a software package for computing Groebner fans and tropical
varieties. These are polyhedral fans associated to polynomial ideals.
The maximal cones of a Groebner fan are in bijection with the marked
reduced Groebner bases of its defining ideal. The software computes
all marked reduced Groebner bases of an ideal. Their union is a
universal Greobner basis. The tropical variety of a polynomial ideal
is a certain subcomplex of the Groebner fan. Gfan contains algorithms
for computing this complex for general ideals and specialized
algorithms for tropical curves, tropical hypersurfaces and tropical
varieties of prime ideals.  In addition to the above core functions
the package contains many tools which are useful in the study of
Groebner bases, initial ideals and tropical geometry.

WWW: http://home.math.au.dk/jensen/software/gfan/gfan.html

PR:		231186
Submitted by:	Lorenzo Salvadore <phascolarctos@protonmail.ch>
2019-02-08 09:27:32 +00:00
Tobias Kortkamp
936047940e math/reduce-psl: Update to 20190120
- Clean up whitespace in pkg-descr

PR:		235581
Submitted by:	pfg (maintainer)
2019-02-08 08:50:01 +00:00
Tobias Kortkamp
f2a504405f math/reduce: Update to 20190120
- Clean up whitespace in pkg-descr

PR:		235580
Submitted by:	pfg (maintainer)
2019-02-08 08:47:42 +00:00
Tobias C. Berner
e349bbbca3 Update KDE Applications to 18.12.2
[1] https://www.kde.org/announcements/announce-applications-18.12.2.php
[2] https://www.kde.org/announcements/fulllog_applications-aether.php?version=18.12.2
2019-02-08 05:11:13 +00:00
Sunpoet Po-Chuan Hsieh
762e768fef Update to 4.09
Changes:	https://metacpan.org/changes/distribution/Math-MPFR
2019-02-07 23:14:36 +00:00
Emanuel Haupt
7fd09f86b9 Update to 4.2.1 2019-02-06 07:58:35 +00:00
Mark Linimon
a7ab4eec68 Base GCC doesn't support -Wno-incompatible-pointer-types, which breaks
building on GCC-based architectures.  Add -Wno-incompatible-pointer-types
only when using Clang.

PR:		235512
Submitted by:	Piotr Kubaj
Approved by:	maintainer
2019-02-06 00:08:08 +00:00
Thierry Thomas
3662bd821e Remove an obsolete dependency to Soprano.
Since I'm there, add an explicit dependency to Qt5-concurrent.

PR:		235501
Reported by:	tcberner
2019-02-05 18:17:56 +00:00
Pietro Cerutti
1e9755658e math/libtommath: update license, pet portlint
Reported by:	https://github.com/libtom/libtommath/issues/122#issuecomment-460083058
2019-02-04 12:00:26 +00:00
Antoine Brodin
72f4491c41 Deprecate ports broken for more than 6 months 2019-02-03 20:46:35 +00:00
David Chisnall
3f627ab4ce Move Objective-C ports to the v2 GNUstep ABI.
* Bump the LLVM revision used for GNUstep to 7, the minimum to support
   the new ABI.
 * GNUstep-back does not work with lld, so mark it to use Gold (BFD LD
   doesn't seem able to link Objective-C things).
 * Turn off some annoying debug logs in GNUstep back, which generate
   several messages per second when you move the mouse.  These should
   never have been enabled in a release build anyway.
 * Downgrade Cenon to 4.0.2.  This was the last version to actually work
   with GNUstep (the later ones use XCode >= 5 .xib files, which GNUstep
   can't parse).
 * Update gorm to git head. The current release doesn't work with the
   new Objective-C ABI, but -head has the patches to fix it.
 * Update PikoPixel and add it to the gnustep-app meta-package.
 * Update the three core GNUstep packages to the latest release.
 * Update gnumail and pantomime to the latest release and fix a linking
   error with the new ABI.
 * Update GNUstep FTP to the latest version.

Reviewed by:	bapt (previous version)
2019-02-03 15:37:58 +00:00
Johannes M Dieterich
e370ca6cf2 math/libpgmath: Remove restriction for FreeBSD11.
With the recent explicit setting of CC/CXX the build is successful on 11 again.
2019-02-03 00:55:48 +00:00
Johannes M Dieterich
63e46c5b76 math/libpgmath: remove superfluous c++11-lib requirement
CC/CXX are explicitly set now. Unbreaks make describe.

PR:		235292
Submitted by:	Yasuhiro KIMURA <yasu@utahime.org>
2019-02-03 00:54:27 +00:00
Yuri Victorovich
5be854937d math/mkl-dnn: Update 0.17.2 -> 0.17.3
Reported by:	portscout
2019-02-02 21:37:34 +00:00
Tobias Kortkamp
a9c3161d00 Reset MAINTAINER of some ports
PR:		235429
Submitted by:	mikael.urankar@gmail.com (maintainer)
2019-02-02 17:23:48 +00:00
Tobias Kortkamp
e18dc628cd math/*: Use NO_WRKSUBDIR 2019-02-02 09:46:25 +00:00
Sunpoet Po-Chuan Hsieh
ace9649d9d Update to 4.08
Changes:	https://metacpan.org/changes/distribution/Math-MPFR
2019-02-01 21:42:13 +00:00
Kai Knoblich
6a4a5116bf Change my maintainer email address to my new one at the FreeBSD project.
Reviewed by:	miwi (mentor)
Approved by:	miwi (mentor)
Differential Revision: https://reviews.freebsd.org/D19050
2019-02-01 18:55:18 +00:00
Dmitry Marakasov
e7aad26c88 - Add LICENSE
- Add NO_ARCH

Approved by:	portmgr blanket
2019-02-01 09:00:38 +00:00
Tobias Kortkamp
b4cf4d405d Only append to EXTRA_PATCHES after bsd.port.pre.mk 2019-01-31 17:51:39 +00:00
Pietro Cerutti
dac7957e58 math/libtommath: update to 1.1.0
Release notes: https://www.libtom.net/news/LTM_1.1.0/
2019-01-31 11:50:23 +00:00
Dmitry Marakasov
c4aeac00e4 - Add LICENSE
Approved by:	portmgr blanket
2019-01-31 09:00:37 +00:00
Yuri Victorovich
124699d03c math/py-Diofant: Update 0.9.0 -> 0.10.0
Reported by:	portscout
2019-01-31 05:22:03 +00:00
Steve Wills
2fd6a932d8 math/py-pandas: update to 0.24.0
PR:		235335
Submitted by:	John W. O'Brien <john@saltant.com> (maintainer)
2019-01-31 01:16:02 +00:00
Stefan Eßer
6b6755bb39 Upgrade to version 1.1.1.
Approved by:	antoine (implicit)
2019-01-30 20:19:14 +00:00
Sunpoet Po-Chuan Hsieh
9d4ea56f5b Update to 4.07
Changes:	https://metacpan.org/changes/distribution/Math-MPFR
2019-01-30 19:22:29 +00:00
Stefan Eßer
37522c57d7 Update distinfo after changes to the configure script and documentation
have been applied in the repo under the version tag used for the port.

Approved by:	antoine (implicit)
2019-01-29 21:00:13 +00:00
Stefan Eßer
21b37c42b5 Fix CONFLICTS_INSTALL pattern to really match the math/gnubc port.
I had missed the PKGNAMEPREFIX in the GNU bc port ...

Approved by:    antoine	(implicit)
2019-01-29 19:31:08 +00:00
Stefan Eßer
abaea7ff90 New port of a BSD licensed and GNU compatible bc and dc program.
These programs have been used in a number of other projects over
many years and they are highly portable and heavily tested.

Obtained from:	Gavin Howard <gavin.d.howard@gmail.com>
Approved by:	antoine (mentor)
2019-01-28 21:59:41 +00:00
Johannes M Dieterich
fad52d78d2 math/libpgmath: enforce usage of LLVM6
LLVM7 on 13-CURRENT breaks intrinsics definitions.
2019-01-28 03:12:12 +00:00
Kurt Jaeger
53f39b50b4 math/maxima: fix if quicklisp is being referenced in .sbclrc
- adding a new option NOUSERINIT, enabled by default
  when enabled, if the chosen lisp implementation is sbcl (the default),
  it ensures that sbcl is run ignoring any user init file (~/.sbclrc)

PR:		234853
Submitted by:	Lorenzo Salvadore <phascolarctos@protonmail.ch> (maintainer)
Reported by:	jszhao@yeah.net
2019-01-27 11:56:41 +00:00
Yuri Victorovich
8fa7e780d0 math/py-gau2grid: Update 1.3.0 -> 1.3.1
Switch to cmake based on the upstream recommendation.

Reported by:	repology
2019-01-26 20:29:29 +00:00
Sunpoet Po-Chuan Hsieh
1480a5798a Update to 1.5.15
Changes:	https://bitbucket.org/jeunice/intspan/src/default/CHANGES.yml
2019-01-26 12:43:15 +00:00
Yuri Victorovich
953c1d4a58 math/gau2grid: Update 1.3.0 -> 1.3.1
Reported by:	repology
2019-01-26 06:07:05 +00:00
Yuri Victorovich
f022f448cf math/gretl: Update 2018d -> 2019a
Reported by:	portscout
2019-01-26 05:19:20 +00:00
Yuri Victorovich
f4708ea209 math/py-cvxpy: Update 1.0.13 -> 1.0.14
Reported by:	portscout
2019-01-26 04:09:44 +00:00
Kurt Jaeger
2820c7e3bc math/maxima: update 5.42.1 -> 5.42.2
PR:		235192
Submitted by:	Lorenzo Salvadore <phascolarctos@protonmail.ch> (maintainer)
Relnotes:	https://sourceforge.net/p/maxima/code/ci/master/tree/ChangeLog-5.42.md
2019-01-25 19:56:10 +00:00