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ports/biology/samtools/files/patch-Makefile
Luca Pizzamiglio ecaa1024a6 biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
2017-10-25 10:19:50 +00:00

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--- Makefile.orig 2017-09-28 11:12:01 UTC
+++ Makefile
@@ -40,23 +40,22 @@ AOBJS= bam_index.o bam_plcmd.o sam_
bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o \
bam_quickcheck.o bam_addrprg.o bam_markdup.o
-prefix = /usr/local
+prefix = ${PREFIX}
exec_prefix = $(prefix)
bindir = $(exec_prefix)/bin
datarootdir = $(prefix)/share
-mandir = $(datarootdir)/man
+mandir = $(prefix)/man
man1dir = $(mandir)/man1
# Installation location for $(MISC_PROGRAMS) and $(MISC_SCRIPTS)
-misc_bindir = $(bindir)
+misc_bindir = $(bindir)/samtools_misc
MKDIR_P = mkdir -p
-INSTALL = install -p
-INSTALL_DATA = $(INSTALL) -m 644
-INSTALL_DIR = $(MKDIR_P) -m 755
-INSTALL_MAN = $(INSTALL_DATA)
-INSTALL_PROGRAM = $(INSTALL)
-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
+INSTALL_DATA = ${BSD_INSTALL_DATA}
+INSTALL_DIR = $(MKDIR_P)
+INSTALL_MAN = ${BSD_INSTALL_MAN}
+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
PROGRAMS = samtools