Po-Chuan Hsieh
150c0018fd
- Update USE_PYTHON=cython{,_run,_test}
- Convert all cython3 occurrence to USE_PYTHON=cython3*
- While I'm here, fix incorrect usage of combining cython3 in BUILD_DEPENDS and USE_PYTHON=cython
It is added to simplify the future transition from Cython 0.29 to 3.
The minimal version is set to 3.0.12 because it is required by devel/py-propcache.
The upper bound of version is set to 3.1 because it is limited by multiple ports.
33 lines
1.1 KiB
Makefile
33 lines
1.1 KiB
Makefile
PORTNAME= pyrodigal
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DISTVERSION= 3.6.3
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CATEGORIES= biology python
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MASTER_SITES= PYPI
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Python binding for Prodigal, an ORF finder for genomes and metagenomes
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WWW= https://pyrodigal.readthedocs.io/en/stable/ \
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https://github.com/althonos/pyrodigal
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/COPYING
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BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR}
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TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}archspec>0:devel/py-archspec@${PY_FLAVOR}
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USES= cmake:indirect python
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USE_PYTHON= autoplist concurrent cython3 pep517 pytest
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TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
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xpost-build:
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@cd ${BUILD_WRKSRC} && ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build_ext --inplace
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_EXT_SUFFIX}.so
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do-test: # as of 3.6.3 this doesn't work: https://github.com/althonos/pyrodigal/issues/63
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@cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv
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.include <bsd.port.mk>
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