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ports/science
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Koop Mast 2c6932c853 Stagify, switch to USES=tar:bzip2 and gmake. 
Convert BUILD_/RUN_DEPENDS on shared-mime-info into USES=shared-mime-info
2014-04-09 13:17:04 +00:00
..
2d-rewriter
Remove trailing whitespaces from category science
2014-02-21 13:39:18 +00:00
2dhf
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
abinit
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
afni
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
avogadro
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
bddsolve
- Support staging
2014-03-20 09:34:19 +00:00
bft
Convert s* to USES=zip
2014-03-10 17:01:36 +00:00
bodr
…
brian
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
buddy
- Stage support
2014-02-21 01:58:34 +00:00
cdcl
Support stage
2014-04-07 15:30:00 +00:00
cdf
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
cdo
- Add LICENSE
2014-04-06 05:46:46 +00:00
cgnslib
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
checkmol
- Bump PORTREVISION. Freepascal compiler was updated to 2.6.4
2014-03-26 04:04:45 +00:00
chemical-mime-data
Stagify, switch to USES=tar:bzip2 and gmake.
2014-04-09 13:17:04 +00:00
chemtool
…
chemtool-devel
…
clhep
…
colt
…
crf++
Fix properties on pkg-plist
2014-01-21 23:40:21 +00:00
dcl
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
devisor
…
dlpoly-classic
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
dtiquery
…
ecs
- Unbreak Code_Saturne;
2014-03-26 23:29:28 +00:00
elmer-eio
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
elmer-hutiter
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
elmer-matc
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
elmer-meshgen2d
…
elmergrid
…
elmerpost
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
epte
- Stage support
2014-02-06 10:41:38 +00:00
euler
Deprecate a few old unmaintained ports
2014-03-11 21:21:14 +00:00
fastcap
- Stage support
2014-02-21 05:29:59 +00:00
fasthenry
…
felt
Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years)
2014-03-08 22:26:21 +00:00
fisicalab
…
flounder
Deprecate a few old unmaintained ports
2014-03-11 21:21:14 +00:00
fvcom
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
fvcom-mpi
…
fvm
- Unbreak Code_Saturne;
2014-03-26 23:29:28 +00:00
g3data
Consolidate the docbook ports into -sgml and -xml variants.
2014-02-19 14:45:19 +00:00
gamess
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
gchemutils
Convert from USE_GECKO to USES=gecko
2014-04-09 10:29:48 +00:00
gdis
Deprecate a few old unmaintained ports
2014-03-11 21:21:14 +00:00
getdp
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
ghemical
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
ghmm
Fix properties on pkg-plist
2014-01-21 23:40:21 +00:00
gnudatalanguage
Fix build on freebsd 10 and 11 by using gcc but linking to libc++
2014-04-08 15:19:11 +00:00
gramps
…
gromacs
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
gsmc
…
gtamsanalyzer
…
gwyddion
- Update to 2.35
2014-03-11 02:42:58 +00:00
h5utils
…
harminv
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
hdf
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
hdf5
- Take maintainership
2014-04-03 18:46:51 +00:00
hdf5-18
- USE_BZIP2 -> USES=tar:bzip2
2014-03-28 12:52:00 +00:00
hdf-java
- Undeprecate by updating MASTER_SITES
2014-03-30 21:37:40 +00:00
hs-bio
- Reroll and update bootstrap Haskell compilers to GHC 7.6.3 on 8.x and
2014-03-29 00:52:54 +00:00
InsightToolkit
…
isaac-cfd
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
jmol
…
jstrack
…
kalzium
KDE/FreeBSD team presents KDE SC 4.12.4 and KDE Workspace 4.11.8!
2014-04-03 09:49:10 +00:00
kst2
graphics/vips and the rest:
2014-03-28 09:23:08 +00:00
lamprop
…
libctl
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
libghemical
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
libint
…
libkml
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
liblinear
Convert s* to USES=zip
2014-03-10 17:01:36 +00:00
liboglappth
- Stage support
2014-02-03 14:31:32 +00:00
libquantum
- Stage support
2014-02-03 13:57:46 +00:00
libsvm
Convert s* to USES=zip
2014-03-10 17:01:36 +00:00
libsvm-python
…
linsmith
…
massxpert
…
mbdyn
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
mcstas
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
medit
…
meep
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
mei
…
minc
…
minc2
- Downgrade to the latest stable release;
2014-01-29 17:31:04 +00:00
mol2ps
- Fix typo
2014-03-26 04:18:14 +00:00
mpb
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
mpqc
support LDFLAGS (fixes libghemical)
2014-03-25 06:30:21 +00:00
mpqc-mpich
…
ncs
- Unbreak Code_Saturne;
2014-03-26 23:29:28 +00:00
netcdf
Add USES=gmake to fix installation on systems that use fmake by default.
2014-03-08 18:07:13 +00:00
netcdf3-ftn
science/netcdf3-ftn: Mark unsafe for parallel builds
2014-03-28 09:19:50 +00:00
netcdf4
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases
2014-02-16 17:15:31 +00:00
netcdf-ftn
…
nifticlib
Restore r323814 to remove MAKE_JOBS_UNSAFE.
2014-02-20 22:40:14 +00:00
openbabel
…
openkim
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
p5-Algorithm-SVMLight
Support staging.
2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize
- add stage support
2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac
- add stage support
2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ
- add stage support
2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
- add stage support
2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok
- Stage support
2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction
- add stage support
2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring
- add stage support
2014-01-29 17:00:41 +00:00
p5-Geo-BUFR
…
p5-Geo-Coordinates-Converter
…
p5-Geo-Coordinates-Converter-iArea
…
p5-Geo-ReadGRIB
- add stage support
2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS
…
p5-PerlMol
- add stage support
2014-01-29 17:00:41 +00:00
p5-Physics-Unit
Support staging.
2014-02-06 14:10:06 +00:00
paje
…
paraview
Upgrading to v. 4.1.
2014-03-31 21:37:11 +00:00
pnetcdf
- Simplify Makefile
2014-04-05 13:54:52 +00:00
psi3
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
psychopy
- Fix build
2014-03-26 01:12:42 +00:00
py-coards
science/py-coards: Modernise and enable STAGE support
2014-01-26 00:52:15 +00:00
py-DendroPy
…
py-h5py
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-hcluster
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-mdp
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-mlpy
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-netCDF4
- Use new LIB_DEPENDS
2014-03-24 02:45:01 +00:00
py-obspy
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-paida
…
py-pupynere
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-pyaixi
…
py-pydap
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-pydicom
…
py-scikit-learn
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-scimath
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-scipy
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-ws2300
…
pybrain
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
pycdf
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
pynn
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
pyteomics
science/pyteomics:
2014-04-03 10:10:18 +00:00
pyteomics.biolccc
Use PYDISTUTILS_AUTOPLIST
2014-01-23 08:42:15 +00:00
qcl
…
qtresistors
…
R-cran-AMORE
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-bayesm
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-DCluster
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-e1071
- Update 1.6-3
2014-03-21 06:12:29 +00:00
R-cran-eco
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-Epi
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-epicalc
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-snow
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
R-cran-som
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
ruby-dcl
Allow packaging as user
2014-04-07 15:31:03 +00:00
ruby-gphys
Support stage
2014-04-07 15:36:57 +00:00
ruby-netcdf
Allow packaging as a user
2014-04-07 15:33:08 +00:00
rubygem-ai4r
…
rubygem-netcdf
This is a Ruby interface to the NetCDF scientific IO library.
2014-03-26 01:15:21 +00:00
sigrok-cli
Chase lang/python31 expiration
2014-03-01 13:35:36 +00:00
silo
…
simlib
…
step
KDE/FreeBSD team presents KDE SC 4.12.4 and KDE Workspace 4.11.8!
2014-04-03 09:49:10 +00:00
svmlight
Fix properties on pkg-plist
2014-01-21 23:40:21 +00:00
szip
- Support staging
2014-03-28 12:25:16 +00:00
udunits
- Update to 2.2.5
2014-04-06 05:46:50 +00:00
v_sim
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
veusz
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
vmd
…
voro++
- Update to 0.4.6
2014-02-21 10:29:52 +00:00
x11iraf
…
xfce4-equake-plugin
- Update to 1.3.4
2014-01-31 12:27:20 +00:00
xmakemol
…
xmds
…
Makefile
This is a Ruby interface to the NetCDF scientific IO library.
2014-03-26 01:15:21 +00:00