Charlie Li
4f0eba1efd
EXT_SUFFIX, according to PEP 3149, refers to the full tag and extension for compiled extension module objects, eg .cpython-311.so, .cpython-313t.so, etc. We do not use the correct semantic meaning, and this usage becomes ambiguous and confusing when tags do not match between bytecode and compiled extension module objects. Rename our PYTHON_EXT_SUFFIX to PYTHON_TAG to align with PEP 3147's specification of a magic tag, which consists of implementation name and shorthand version only. This is meant for bytecode and other files containing this tag in their filename that do not depend on a specific Python ABI for the same version. Chase all existing consumers. Introduce PYTHON_SOABI to align with PEP 3149's specification of a tag, which consists of implementation name, shorthand version and any ABI flags present (this and PYTHON_TAG are identical without ABI flags). This is meant for compiled extension module objects and other files that depend on a specific Python ABI for the same version. Add documentation for these variables that our PYTHON_EXT_SUFFIX never had. PR: 274671 Event: Kitchener-Waterloo Hackathon 202506
33 lines
1.1 KiB
Makefile
33 lines
1.1 KiB
Makefile
PORTNAME= pyrodigal
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DISTVERSION= 3.6.3
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CATEGORIES= biology python
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MASTER_SITES= PYPI
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Python binding for Prodigal, an ORF finder for genomes and metagenomes
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WWW= https://pyrodigal.readthedocs.io/en/stable/ \
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https://github.com/althonos/pyrodigal
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/COPYING
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BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR}
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TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}archspec>0:devel/py-archspec@${PY_FLAVOR}
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USES= cmake:indirect python
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USE_PYTHON= autoplist concurrent cython3 pep517 pytest
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TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
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xpost-build:
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@cd ${BUILD_WRKSRC} && ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build_ext --inplace
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_TAG}.so
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do-test: # as of 3.6.3 this doesn't work: https://github.com/althonos/pyrodigal/issues/63
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@cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv
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.include <bsd.port.mk>
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