Charlie Li
4f0eba1efd
EXT_SUFFIX, according to PEP 3149, refers to the full tag and extension for compiled extension module objects, eg .cpython-311.so, .cpython-313t.so, etc. We do not use the correct semantic meaning, and this usage becomes ambiguous and confusing when tags do not match between bytecode and compiled extension module objects. Rename our PYTHON_EXT_SUFFIX to PYTHON_TAG to align with PEP 3147's specification of a magic tag, which consists of implementation name and shorthand version only. This is meant for bytecode and other files containing this tag in their filename that do not depend on a specific Python ABI for the same version. Chase all existing consumers. Introduce PYTHON_SOABI to align with PEP 3149's specification of a tag, which consists of implementation name, shorthand version and any ABI flags present (this and PYTHON_TAG are identical without ABI flags). This is meant for compiled extension module objects and other files that depend on a specific Python ABI for the same version. Add documentation for these variables that our PYTHON_EXT_SUFFIX never had. PR: 274671 Event: Kitchener-Waterloo Hackathon 202506
252 lines
5.9 KiB
Plaintext
252 lines
5.9 KiB
Plaintext
bin/abba-baba
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bin/bFst
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bin/bed2region
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bin/bgziptabix
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bin/dumpContigsFromHeader
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bin/genotypeSummary
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bin/hapLrt
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bin/iHS
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bin/meltEHH
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bin/normalize-iHS
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bin/pFst
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bin/pVst
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bin/permuteGPAT++
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bin/permuteSmooth
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bin/plotHaps
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bin/popStats
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bin/segmentFst
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bin/segmentIhs
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bin/sequenceDiversity
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bin/smoother
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bin/vcf2bed.py
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bin/vcf2dag
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bin/vcf2fasta
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bin/vcf2sqlite.py
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bin/vcf2tsv
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bin/vcf_strip_extra_headers
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bin/vcfaddinfo
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bin/vcfafpath
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bin/vcfallelicprimitives
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bin/vcfaltcount
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bin/vcfannotate
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bin/vcfannotategenotypes
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bin/vcfbiallelic
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bin/vcfbreakmulti
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bin/vcfcat
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bin/vcfcheck
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bin/vcfclassify
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bin/vcfcleancomplex
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bin/vcfclearid
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bin/vcfclearinfo
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bin/vcfcombine
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bin/vcfcommonsamples
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bin/vcfcomplex
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bin/vcfcountalleles
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bin/vcfcreatemulti
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bin/vcfdistance
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bin/vcfecho
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bin/vcfentropy
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bin/vcfevenregions
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bin/vcffilter
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bin/vcffirstheader
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bin/vcffixup
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bin/vcfflatten
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bin/vcfgeno2alleles
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bin/vcfgeno2haplo
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bin/vcfgenosamplenames
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bin/vcfgenosummarize
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bin/vcfgenotypecompare
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bin/vcfgenotypes
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bin/vcfglbound
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bin/vcfglxgt
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bin/vcfgtcompare.sh
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bin/vcfhetcount
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bin/vcfhethomratio
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bin/vcfindelproximity
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bin/vcfindels
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bin/vcfindex
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bin/vcfinfo2qual
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bin/vcfinfosummarize
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bin/vcfintersect
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bin/vcfjoincalls
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bin/vcfkeepgeno
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bin/vcfkeepinfo
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bin/vcfkeepsamples
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bin/vcfld
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bin/vcfleftalign
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bin/vcflength
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bin/vcfmultiallelic
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bin/vcfmultiway
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bin/vcfmultiwayscripts
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bin/vcfnobiallelicsnps
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bin/vcfnoindels
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bin/vcfnosnps
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bin/vcfnulldotslashdot
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bin/vcfnullgenofields
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bin/vcfnumalt
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bin/vcfoverlay
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bin/vcfparsealts
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bin/vcfplotaltdiscrepancy.r
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bin/vcfplotaltdiscrepancy.sh
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bin/vcfplotsitediscrepancy.r
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bin/vcfplottstv.sh
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bin/vcfprimers
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bin/vcfprintaltdiscrepancy.r
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bin/vcfprintaltdiscrepancy.sh
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bin/vcfqual2info
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bin/vcfqualfilter
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bin/vcfrandom
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bin/vcfrandomsample
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bin/vcfregionreduce
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bin/vcfregionreduce_and_cut
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bin/vcfregionreduce_pipe
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bin/vcfregionreduce_uncompressed
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bin/vcfremap
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bin/vcfremoveaberrantgenotypes
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bin/vcfremovenonATGC
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bin/vcfremovesamples
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bin/vcfroc
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bin/vcfsample2info
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bin/vcfsamplediff
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bin/vcfsamplenames
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bin/vcfsitesummarize
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bin/vcfsnps
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bin/vcfsort
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bin/vcfstats
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bin/vcfstreamsort
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bin/vcfuniq
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bin/vcfuniqalleles
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bin/vcfvarstats
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bin/vcfwave
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bin/wcFst
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include/vcflib/BandedSmithWaterman.h
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include/vcflib/BedReader.h
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include/vcflib/Fasta.h
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include/vcflib/IndelAllele.h
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include/vcflib/IntervalTree.h
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include/vcflib/LargeFileSupport.h
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include/vcflib/LeftAlign.h
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include/vcflib/LeftAlign.hpp
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include/vcflib/Mosaik.h
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include/vcflib/Region.h
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include/vcflib/Repeats.h
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include/vcflib/SmithWatermanGotoh.h
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include/vcflib/Variant.h
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include/vcflib/allele.hpp
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include/vcflib/catch.hpp
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include/vcflib/cdflib.hpp
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include/vcflib/cigar.hpp
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include/vcflib/convert.h
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include/vcflib/disorder.h
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include/vcflib/filevercmp.h
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include/vcflib/gpatInfo.hpp
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include/vcflib/index.hpp
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include/vcflib/join.h
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include/vcflib/legacy.h
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include/vcflib/mt19937ar.h
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include/vcflib/multichoose.h
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include/vcflib/murmur3.hpp
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include/vcflib/pdflib.hpp
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include/vcflib/phase.hpp
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include/vcflib/rkmh.hpp
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include/vcflib/rnglib.hpp
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include/vcflib/split.h
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include/vcflib/ssw.hpp
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include/vcflib/ssw_cpp.hpp
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include/vcflib/stats.hpp
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include/vcflib/tabix.hpp
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include/vcflib/var.hpp
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include/vcflib/vcf-c-api.h
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include/vcflib/vcf-wfa.h
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lib/libvcflib.a
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lib/pyvcflib%%PYTHON_TAG%%.so
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share/man/man1/abba-baba.1.gz
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share/man/man1/bFst.1.gz
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share/man/man1/dumpContigsFromHeader.1.gz
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share/man/man1/genotypeSummary.1.gz
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share/man/man1/hapLrt.1.gz
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share/man/man1/iHS.1.gz
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share/man/man1/meltEHH.1.gz
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share/man/man1/normalize-iHS.1.gz
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share/man/man1/pFst.1.gz
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share/man/man1/pVst.1.gz
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share/man/man1/permuteGPAT++.1.gz
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share/man/man1/permuteSmooth.1.gz
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share/man/man1/plotHaps.1.gz
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share/man/man1/popStats.1.gz
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share/man/man1/pyvcflib.1.gz
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share/man/man1/segmentFst.1.gz
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share/man/man1/segmentIhs.1.gz
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share/man/man1/sequenceDiversity.1.gz
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share/man/man1/smoother.1.gz
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share/man/man1/vcf2dag.1.gz
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share/man/man1/vcf2fasta.1.gz
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share/man/man1/vcf2tsv.1.gz
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share/man/man1/vcfaddinfo.1.gz
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share/man/man1/vcfafpath.1.gz
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share/man/man1/vcfallelicprimitives.1.gz
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share/man/man1/vcfaltcount.1.gz
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share/man/man1/vcfannotate.1.gz
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share/man/man1/vcfannotategenotypes.1.gz
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share/man/man1/vcfbreakmulti.1.gz
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share/man/man1/vcfcat.1.gz
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share/man/man1/vcfcheck.1.gz
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share/man/man1/vcfclassify.1.gz
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share/man/man1/vcfcleancomplex.1.gz
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share/man/man1/vcfcombine.1.gz
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share/man/man1/vcfcommonsamples.1.gz
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share/man/man1/vcfcountalleles.1.gz
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share/man/man1/vcfcreatemulti.1.gz
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share/man/man1/vcfdistance.1.gz
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share/man/man1/vcfecho.1.gz
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share/man/man1/vcfentropy.1.gz
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share/man/man1/vcfevenregions.1.gz
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share/man/man1/vcffilter.1.gz
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share/man/man1/vcffixup.1.gz
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share/man/man1/vcfflatten.1.gz
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share/man/man1/vcfgeno2alleles.1.gz
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share/man/man1/vcfgeno2haplo.1.gz
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share/man/man1/vcfgenosamplenames.1.gz
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share/man/man1/vcfgenosummarize.1.gz
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share/man/man1/vcfgenotypecompare.1.gz
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share/man/man1/vcfgenotypes.1.gz
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share/man/man1/vcfglbound.1.gz
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share/man/man1/vcfglxgt.1.gz
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share/man/man1/vcfhetcount.1.gz
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share/man/man1/vcfhethomratio.1.gz
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share/man/man1/vcfindex.1.gz
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share/man/man1/vcfinfo2qual.1.gz
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share/man/man1/vcfinfosummarize.1.gz
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share/man/man1/vcfintersect.1.gz
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share/man/man1/vcfkeepgeno.1.gz
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share/man/man1/vcfkeepinfo.1.gz
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share/man/man1/vcfkeepsamples.1.gz
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share/man/man1/vcfld.1.gz
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share/man/man1/vcfleftalign.1.gz
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share/man/man1/vcflength.1.gz
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share/man/man1/vcflib-api.1.gz
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share/man/man1/vcflib.1.gz
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share/man/man1/vcfnulldotslashdot.1.gz
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share/man/man1/vcfnullgenofields.1.gz
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share/man/man1/vcfnumalt.1.gz
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share/man/man1/vcfoverlay.1.gz
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share/man/man1/vcfparsealts.1.gz
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share/man/man1/vcfprimers.1.gz
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share/man/man1/vcfqual2info.1.gz
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share/man/man1/vcfrandom.1.gz
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share/man/man1/vcfrandomsample.1.gz
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share/man/man1/vcfremap.1.gz
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share/man/man1/vcfremoveaberrantgenotypes.1.gz
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share/man/man1/vcfremovesamples.1.gz
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share/man/man1/vcfroc.1.gz
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share/man/man1/vcfsample2info.1.gz
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share/man/man1/vcfsamplediff.1.gz
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share/man/man1/vcfsamplenames.1.gz
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share/man/man1/vcfsitesummarize.1.gz
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share/man/man1/vcfstats.1.gz
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share/man/man1/vcfstreamsort.1.gz
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share/man/man1/vcfuniq.1.gz
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share/man/man1/vcfuniqalleles.1.gz
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share/man/man1/vcfwave.1.gz
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share/man/man1/wcFst.1.gz
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