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Jason W. Bacon 65b8ab9349 biology/bcftools: Update to 1.17 
Numerous enhancements and bug fixes

Changes: https://github.com/samtools/bcftools/releases

Reported by:    portscout
2023-02-24 17:30:58 -06:00
..
abyss
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
ad2vcf
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
artemis
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
atac-seq
biology/atac-seq: Drop biology/igv dep
2023-02-19 12:11:12 -06:00
augustus
math/suitesparse*: bump PORTREVISION of dependant ports
2023-01-19 17:45:37 +01:00
avida
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
babel
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bamtools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bamutil
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
barrnap
biology/barrnap: Update descr
2022-11-24 19:12:18 -08:00
bbmap
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bcftools
biology/bcftools: Update to 1.17
2023-02-24 17:30:58 -06:00
bedtools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bfc
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bio-mocha
biology/bio-mocha: Update to 1.16
2023-01-05 17:21:03 -06:00
bioawk
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
biococoa
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
biolibc
biology/biolibc: Update to 0.2.4
2022-12-11 14:06:23 -06:00
biolibc-tools
biology/biolibc-tools: Update to 0.1.4.1
2022-12-13 18:11:56 -06:00
bioparser
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
biosig
math/suitesparse*: bump PORTREVISION of dependant ports
2023-01-19 17:45:37 +01:00
biosoup
biology/biosoup: Update g20201216 -> 0.10.0-2
2022-10-10 23:10:56 -07:00
biostar-tools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bolt-lmm
*/*: bump libboost*.so libraries consumert after Boost upgrade
2023-01-16 22:32:07 +03:00
bowtie
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
bowtie2
biology/bowtie2: Update to 2.5.1
2023-01-21 16:30:48 -06:00
bwa
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
canu
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
cd-hit
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
cdbfasta
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
checkm
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
clustal-omega
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
clustalw
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
cufflinks
*/*: bump libboost*.so libraries consumert after Boost upgrade
2023-01-16 22:32:07 +03:00
cytoscape
biology/cytoscape: Broken on armv6, armv7
2022-12-10 23:41:04 -08:00
ddocent
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
diamond
biology/diamond: Update to 2.1.3
2023-02-22 07:48:44 -04:00
dsr-pdb
*/*: bump libboost*.so libraries consumert after Boost upgrade
2023-01-16 22:32:07 +03:00
edlib
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
emboss
biology/emboss: Ignore with mysql 8.0
2023-02-01 04:39:38 -06:00
erminej
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
exonerate
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fasda
biology/fasda: Fast and simple differential analysis
2022-12-12 11:17:22 -06:00
fasta
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fasta3
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastahack
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastdnaml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastool
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastp
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastq-trim
biology/fastq-trim: Update to 0.1.2
2022-12-11 15:24:05 -06:00
fastqc
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fasttree
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fastx-toolkit
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
figtree
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
flash
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
fluctuate
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
freebayes
biology/freebayes: Drop redundant tabixpp dep
2023-01-22 10:42:34 -06:00
garlic
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gatk
biology/gatk: Update 4.2.6.1 -> 4.3.0.0
2022-11-26 20:06:47 -08:00
gcta
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gemma
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
generand
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gff2ps
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gffread
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gmap
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
gperiodic
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
graphlan
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
groopm
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
haplohseq
*/*: bump libboost*.so libraries consumert after Boost upgrade
2023-01-16 22:32:07 +03:00
hhsuite
biology/hhsuite: Disable on 32-bit architectures following upstream advice
2022-10-01 11:16:04 -07:00
hisat2
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
hmmer
biology/hmmer: Update to 3.3.2
2022-10-11 15:13:01 -05:00
htslib
biology/htslib: Update to 1.17
2023-02-24 17:23:25 -06:00
hyphy
biology/hyphy: Update to 2.5.47
2023-02-03 23:36:47 -04:00
igv
biology/igv: Update 2.9.4 → 2.16.0
2023-02-19 23:20:49 -08:00
infernal
biology/infernal: Update to 1.1.4
2022-10-12 11:15:54 +01:00
iolib
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
iqtree
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
jalview
biology/jalview: Update 2.11.1.4 -> 2.11.2.5
2022-10-11 23:58:18 -07:00
jellyfish
biology/jellyfish: Bump PORTREVISION for biology/htslib update
2023-01-05 19:24:44 -06:00
kallisto
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
kmcp
all: Bump PORTREVISION after lang/go{119,120} update
2023-02-15 14:06:01 -05:00
lamarc
biology/lamarc: Refactor after wxgtk28 removal
2022-12-31 04:54:58 +01:00
libbigwig
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
libcombine
biology/libcombine: Update 0.2.19 -> 0.2.20
2022-12-08 03:11:24 -08:00
libgff
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
libgtextutils
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
libneurosim
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
libnuml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
libsbml
biology/libsbml: unbreak build after 18c6e18276 (+)
2023-01-18 17:47:24 +03:00
libsedml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
linux-foldingathome
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mafft
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mapm3
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
megahit
biology/megahit: Add cmake patch to respect ports build flags
2022-11-24 08:10:13 -06:00
metaeuk
biology/metaeuk: Fix build on systems withour OpenMP enabled
2022-12-10 01:51:02 -08:00
migrate
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
minimap2
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mmseqs2
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
molden
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mothur
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mrbayes
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
mummer
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
muscle
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
ncbi-blast+
devel/grpc: Update to 1.49.0
2022-10-03 10:14:06 +08:00
ncbi-cxx-toolkit
graphics/proj: Update to 9.1.1
2023-01-18 15:48:50 +01:00
ncbi-entrez-direct
all: Bump PORTREVISION after lang/go{119,120} update
2023-02-15 14:06:01 -05:00
ncbi-toolkit
*/*: Bump PORTREVISION for consumers of libunistring
2022-10-22 11:36:07 +02:00
ncbi-vdb
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
ngs-sdk
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-AcePerl
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-ASN1-EntrezGene
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Cluster
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Coordinate
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Das
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Das-Lite
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-DB-EMBL
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-DB-NCBIHelper
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-FeatureIO
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-GFF3
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Glite
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Graphics
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-MAGETAB
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-NEXUS
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Phylo
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-SCF
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-Bio-Variation
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-BioPerl
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-BioPerl-Run
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
p5-transdecoder
biology/p5-transdecoder: Update to 5.7.0
2023-01-30 16:30:54 -06:00
p5-TrimGalore
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
paml
biology/paml: Update to 4.10.6
2022-11-12 22:35:29 -04:00
pbbam
biology/pbbam: Bump PORTREVISION for biology/htslib update
2023-01-05 19:25:09 -06:00
pbseqan
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
peak-classifier
biology/peak-classifier: Update to 0.1.4-5
2022-12-11 14:09:20 -06:00
pear-merger
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
phrap
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
phred
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
phyml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
picard-tools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
plink
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
pooler
biology/pooler: update to 1.86
2022-12-19 08:56:15 +01:00
primer3
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
prodigal
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
prodigy-lig
biology/prodigy-lig: Update 1.0.0-3 -> 1.0.1
2023-01-23 00:17:38 -08:00
protomol
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
psi88
Remove WWW lines that have been moved into Makefiles
2022-09-08 17:46:38 +02:00
py-bcbio-gff
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-biom-format
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-biopython
biology/py-biopython: Update to 1.80
2022-12-05 19:45:16 +08:00
py-biosig
biology/py-biosig: New port: Library for reading and writing different biosignal data format
2022-12-30 00:32:02 -08:00
py-bx-python
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-crossmap
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-cutadapt
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-deeptools
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-deeptoolsintervals
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-dna-features-viewer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-dnaio
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-ete3
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-Genesis-PyAPI
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-gffutils
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-goatools
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-gtfparse
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-hits
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-libnuml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
py-libsedml
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
py-loompy
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-macs2
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
py-mrcfile
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-multiqc
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-ont-fast5-api
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
py-orange3-bioinformatics
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-orange3-single-cell
Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"
2022-12-06 12:12:04 +01:00
py-pandas-charm
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-py2bit
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-pybigwig
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-pyfaidx
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-pyrodigal
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-pysam
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-PySCeS
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-python-libsbml
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-pywgsim
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-resdk
Revert "Mk/Uses/python.mk: Fix USE_PYTHON=pep517: always compile and install bytecode"
2023-02-05 14:05:02 -05:00
py-scikit-bio
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
py-valerius
biology/py-valerius: New port: Python bioinformatics tools
2022-10-03 21:06:22 -07:00
py-xenaPython
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
pyfasta
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
python-nexus
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
2023-01-11 18:58:34 +03:00
rainbow
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
rampler
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
readseq
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
recombine
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
rna-seq
biology/rna-seq: Drop biology/igv dep
2023-02-19 12:10:17 -06:00
ruby-bio
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
2023-01-14 17:08:33 -06:00
rubygem-bio
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
2023-01-14 17:08:33 -06:00
rubygem-bio-executables
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
2023-01-14 17:08:33 -06:00
rubygem-bio-old-biofetch-emulator
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
2023-01-14 17:08:33 -06:00
rubygem-bio-shell
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
2023-01-14 17:08:33 -06:00
sam2pairwise
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
samtools
biology/samtools: Update to 1.17
2023-02-24 17:27:21 -06:00
scrm
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seaview
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqan
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqan1
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqan3
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqan-apps
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqio
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
seqkit
all: Bump PORTREVISION after lang/go{119,120} update
2023-02-15 14:06:01 -05:00
seqtk
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
sigviewer
Mk/Uses: always use colon for build/run suffix
2022-09-11 12:20:14 +02:00
sim4
Remove WWW lines that have been moved into Makefiles
2022-09-08 17:46:38 +02:00
slclust
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
smithwaterman
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
snpeff
biology/snpeff: Update to 5.1
2022-12-19 12:50:00 -06:00
spoa
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
sra-tools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
stacks
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
star
biology/star: Bump PORTREVISION for biology/htslib update
2023-01-05 19:27:16 -06:00
stringtie
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
subread
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
tabixpp
biology/tabixpp: Deprecate
2023-01-22 11:01:57 -06:00
taxonkit
all: Bump PORTREVISION after lang/go{119,120} update
2023-02-15 14:06:01 -05:00
treekin
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
treepuzzle
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
trimadap
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
trimmomatic
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
tRNAscan-SE
biology/tRNAscan-SE: Update to 2.0.11
2022-10-12 12:45:24 +01:00
ucsc-userapps
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
ugene
Mk/Uses: always use colon for build/run suffix
2022-09-11 12:20:14 +02:00
unikmer
all: Bump PORTREVISION after lang/go{119,120} update
2023-02-15 14:06:01 -05:00
vcf2hap
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
vcf-split
biology/vcf-split: Update to 0.1.5-4
2022-12-11 14:11:33 -06:00
vcflib
biology/vcflib: Update to 1.0.7
2023-02-09 09:35:32 -06:00
vcftools
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
velvet
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
viennarna
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
vsearch
biology/vsearch: Update to 2.22.1
2022-09-21 11:24:14 -05:00
vt
biology/vt: Bump PORTREVISION for biology/htslib update
2023-01-05 19:19:19 -06:00
wfa2-lib
biology/wfa2-lib: Unbreak build on aarch64, probably others
2023-01-31 09:17:52 -06:00
wise
Remove WWW entries moved into port Makefiles
2022-09-07 23:58:51 +02:00
Makefile
biology/wfa2-lib: Exact gap-affine algorithm using homology
2023-01-30 13:09:02 -06:00