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ports/science
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Po-Chuan Hsieh 9db7886338 science/py-spaghetti: Update to 1.6.5 
Changes:	https://github.com/pysal/spaghetti/releases
2022-01-24 02:50:48 +08:00
..
2d-rewriter
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
abinit
science/abinit: Remove PY_PYGMENTS
2021-06-21 00:16:17 +08:00
afni
science/afni: update to 22.0.00
2022-01-13 10:20:51 +01:00
agrum
science/agrum: Update 0.22.0 -> 0.22.1
2021-09-13 15:28:57 -07:00
aircraft-datcom
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ALPSCore
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
antioch
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
apbs
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ascent
science/ascent: New port: Visualization and analysis runtime for multi-physics HPC simulations
2021-09-16 09:46:15 -07:00
atompaw
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
avogadro2
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
avogadrolibs
science/[,py-]spglib: Update 1.16.1 -> 1.16.2
2021-08-15 18:32:15 -07:00
axom
science/axom: mark BROKEN on powerpc
2021-12-23 22:25:51 +00:00
bagel
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
bddsolve
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
berkeleygw
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
bodr
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
buddy
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
cantera
science/cantera: For OCTAVE option, fix .mex file path
2021-12-22 01:24:51 -08:00
cdcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
cdf
*: Clean up some things
2022-01-17 14:20:25 +01:00
cdk
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
cdo
science/cdo: Update to 2.0.3
2022-01-24 02:17:49 +08:00
cgnslib
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
cgribex
science/cgribex: Simplify Makefile
2021-05-12 05:47:00 +08:00
checkmol
games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION
2021-07-31 21:03:46 -05:00
chemical-mime-data
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
chemicalfun
science/chemicalfun: New port: C++ library for working with chemical reactions and formulas
2022-01-18 10:42:45 -08:00
chemps2
science/chemps2: Update 1.8.10 -> 1.8.11
2022-01-12 00:56:35 -08:00
chemtool
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
chemtool-devel
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
chimes-calculator
science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient Simulation
2022-01-18 23:05:13 -08:00
chrono
devel/flatbuffers: Update 1.12.0 -> 2.0.0
2021-05-11 12:49:07 -07:00
clhep
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
clipper
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
code_saturne
science/PETSc: Update 3.14.1 -> 3.16.3
2022-01-07 00:34:46 -08:00
colt
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
conduit
science/conduit: Update 0.7.2 -> 0.8.0
2021-12-28 09:09:40 -08:00
coordgenlibs
science/coordgenlibs: Update 2.0.3 -> 3.0.0
2021-09-09 13:00:09 -07:00
cp2k
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
cp2k-data
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
crf++
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
csvtk
science/csvtk: Update to 0.24.0
2021-11-30 18:00:16 -06:00
dakota
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
dalton
Regenerate all distfiles using gitlab as source.
2021-04-09 20:44:23 +02:00
dcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
devisor
all: Remove all other $FreeBSD keywords.
2021-04-06 16:31:13 +02:00
dftbplus
science/dftbplus: Fix tests
2022-01-16 15:30:33 -08:00
dftd4
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
dkh
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
dlib-cpp
science/dlib-cpp: remove the patch that is now committed upstream and breaks the build on powerpc64le
2021-04-11 22:45:40 +00:00
drawxtl
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
dvc
Unbreak ports after devel/py-gitpython's PORTNAME change
2021-04-29 13:53:44 -04:00
dynare
finance/py-bitcoin: Remove LICENSE from plist
2022-01-12 13:43:11 -08:00
eccodes
science/eccodes: Update to 2.24.0
2022-01-24 02:17:51 +08:00
elk
science/elk: Update 7.2.42 -> 8.3.15
2022-01-14 08:48:12 -08:00
elmerfem
math/vtk9: Update 9.0.3 -> 9.1.0
2021-11-22 01:40:34 -08:00
epte
*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.
2021-09-06 23:13:27 +02:00
erd
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ergo
Fix CONFLICTS entries of multiple ports
2022-01-10 16:15:39 +01:00
erkale
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
erkale-pseudopotentials
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
fastcap
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
fasthenry
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
fastjet
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
fisicalab
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
fleur
science/fleur: Fix typo in USES
2022-01-05 11:55:01 -08:00
frontistr
science/frontistr adding FrontISTR
2021-04-26 12:17:38 +02:00
fsom
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
fvcom
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
fvcom-mpi
*: Clean up some things
2021-10-12 17:01:38 +02:00
gabedit
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
gamess-us
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
gchemutils
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
gdma
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
getdp
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
ghemical
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
ghmm
Fix CONFLICTS entries of multiple ports
2022-01-10 16:15:39 +01:00
gnudatalanguage
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
gpaw-setups
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
gramps
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
grib_api
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
gromacs
science/gromacs: Update 2021.4 -> 2021.5
2022-01-15 14:50:02 -08:00
gsmc
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
gtamsanalyzer
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
h5utils
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
h5z-zfp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
harminv
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
hdf
science/hdf: add back the previously removed powerpc workaround
2021-06-16 22:33:27 +00:00
hdf5
science/hdf5: Add CPE information
2021-10-14 12:26:24 +02:00
hdf5-18
science/hdf5-18: Add CPE information
2021-10-14 12:26:39 +02:00
healpix
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
helfem
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
hepmc3
science/hepmc3: Update 3.2.3 -> 3.2.4
2021-07-09 10:01:32 -07:00
highfive
science/highfive: Update 2.3 -> 2.3.1
2021-08-05 13:10:25 -07:00
hypre
science/hypre: fix build on powerpc64*
2021-11-07 12:15:02 +00:00
iboview
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
InsightToolkit
*/*: Fix ENOTIME: return my ports to the pool
2021-05-22 10:13:01 +08:00
isaac-cfd
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
jdftx
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
jmol
science/jmol: Update 14.32.13 -> 14.32.14
2022-01-20 15:31:43 -08:00
jstrack
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
kalzium
KDE: Update KDE Gear to 21.12.1
2022-01-06 16:38:38 +01:00
kim-api
many: Depend on vim instead of vim-console
2021-09-02 12:09:29 -06:00
kst2
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
lammps
science/lammps: Update patch_2Jul2021 -> stable_29Sep2021
2021-09-30 10:30:10 -07:00
lamprop
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
latte
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libaec
science/libaec: Update to 1.0.6
2021-09-28 03:48:08 +08:00
libccp4
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libcint
science/libcint: Update 4.4.6 -> 5.1.0
2021-12-26 12:21:24 -08:00
libctl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libecpint
science/libecpint: Update 1.0.6 -> 1.0.7
2021-12-14 14:41:53 -08:00
libefp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libgeodecomp
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libghemical
science/libghemical: Remove LD_PRELOAD vecause it configured now without it
2021-09-26 10:43:55 -07:00
libgridxc
science/libgridxc: Update 0.8.5 -> 0.9.6
2021-04-23 18:36:22 -07:00
libint
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libint2
science/libint2: Update 2.6.0 -> 2.7.1
2021-11-06 16:56:36 -07:00
libkml
devel/googletest: update to 1.11.0
2021-06-12 03:25:45 +00:00
liblinear
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libmbd
science/libmbd: New port: Many-body dispersion library
2022-01-16 21:15:11 -08:00
libmsym
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libnegf
science/libnegf: Add options; Correct license
2022-01-17 14:41:21 -08:00
liboglappth
*: fix tab vs. space issues, and comments according to the guide.
2021-10-16 11:51:39 +02:00
libquantum
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libssm
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libsvm
*: Clean up some things
2021-10-12 17:01:38 +02:00
libsvm-python
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libvdwxc
Regenerate all distfiles using gitlab as source.
2021-04-09 20:44:23 +02:00
libxc
science/libxc: update to 5.1.7
2022-01-05 16:50:13 -06:00
liggghts
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
linux-zotero
science/linux-zotero: Clean up
2021-11-08 00:33:54 +01:00
luscus
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
madness
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
maeparser
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
massxpert
Regenerate all distfiles using gitlab as source.
2021-04-09 20:44:23 +02:00
mbdyn
science/mbdyn: fix build on powerpc64*
2021-11-08 15:52:33 +00:00
mcstas
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mcstas-comps
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
mctc-lib
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
mcxtrace
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mcxtrace-comps
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mdynamix
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
medit
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
metaphysicl
science/metaphysicl: Update 1.3.2 -> 1.3.3
2021-12-13 09:19:09 -08:00
minc2
*/*: Remove redundant '-[0-9]*' from CONFLICTS
2021-10-29 11:50:18 +02:00
mmdb2
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mmtf-cpp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mol2ps
games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION
2021-07-31 21:03:46 -05:00
molgif
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
molscript
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
molsketch
science/molsketch: Update 0.7.1 -> 0.7.2
2021-04-07 11:47:02 -07:00
mpb
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
mpqc
science/mpqc: regen plist after doxygen update (+)
2021-12-16 11:49:52 +03:00
msms
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
mstore
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
multicharge
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
multiwfn
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
namd
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
nest
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
netcdf
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
netcdf-cxx
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
netcdf-fortran
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
nifticlib
*/*: Remove redundant '-[0-9]*' from CONFLICTS
2021-10-29 11:50:18 +02:00
nwchem
science/nwchem: Update 7.0.2.20211109 -> 7.0.2.20211110
2021-11-12 11:02:09 -08:00
nwchem-data
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
octopus
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
openbabel
*/*: Remove redundant '-*' from CONFLICTS definitions
2021-11-25 22:40:11 +01:00
openems
science/openems: Only works on amd64 and powerpc64.
2021-11-14 16:31:37 +01:00
openkim
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
openkim-models
many: Depend on vim instead of vim-console
2021-09-02 12:09:29 -06:00
openmc
science/openmc: Unbreak LIBMESH option by switching to mpich
2021-10-12 13:52:17 -07:00
openmx
science/openmx: Cleanup - remove unnecessary lines
2021-09-05 10:00:44 -07:00
opensim-core
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
opensph
devel/onetbb: Update to 2021.5.0
2022-01-05 17:43:54 +01:00
opsin
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
orthanc
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
2021-11-05 12:09:19 -07:00
orthanc-dicomweb
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
2021-11-05 12:09:19 -07:00
orthanc-mysql
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
2021-11-05 12:09:19 -07:00
orthanc-postgresql
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
2021-11-05 12:09:19 -07:00
orthanc-webviewer
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
2021-11-05 12:09:19 -07:00
p5-Algorithm-SVMLight
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-3DBuilder
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Bond-Find
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Canonicalize
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Elements
science/p5-Chemistry-Elements: Update to 1.075
2021-11-06 03:15:55 +08:00
p5-Chemistry-File-MDLMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-Mopac
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-PDB
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SLN
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMARTS
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMILES
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-VRML
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-XYZ
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-FormulaPattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-InternalCoords
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Isotope
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-MacroMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-MidasPattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Mok
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Mol
science/p5-Chemistry-Mol: Sort PLIST
2021-07-15 00:10:34 +08:00
p5-Chemistry-Pattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Reaction
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Ring
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-BUFR
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter-iArea
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-WebService-Elevation-USGS
science/p5-Geo-WebService-Elevation-USGS: Update to 0.120
2021-11-06 03:15:56 +08:00
p5-Mcstas-Tools
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
p5-PerlMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Physics-Unit
*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.
2021-09-06 23:13:27 +02:00
packmol
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
pagmo2
devel/onetbb: Update to 2021.5.0
2022-01-05 17:43:54 +01:00
paje
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
pcmsolver
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
PETSc
science/PETSc: Update 3.14.1 -> 3.16.3
2022-01-07 00:34:46 -08:00
phonopy
science/phonopy: New port: Package for phonon calculations at harmonic and quasi-harmonic levels
2021-08-05 09:51:48 -07:00
plumed
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
pnetcdf
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
pulseview
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
py-abipy
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-access
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-asdf
science/py-asdf: Update to 2.8.3
2022-01-12 02:44:39 +08:00
py-ase
science/py-ase: Update 3.22.0 -> 3.22.1
2022-01-03 23:11:21 -08:00
py-avogadrolibs
science/py-avogadrolibs: Update 1.93.0 -> 1.94.0
2021-06-04 10:56:40 -07:00
py-cdo
science/py-cdo: Update to 1.5.6
2022-01-24 02:50:47 +08:00
py-chainer
devel/protobuf: Update to 3.17.3
2021-07-22 02:11:52 +08:00
py-chainer-chemistry
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-chempy
science/py-chempy: Update 0.8.1 -> 0.8.2
2021-09-21 10:47:02 -07:00
py-cirq-aqt
science/py-cirq-*: Update to 0.12.0
2021-08-12 01:57:37 -07:00
py-cirq-core
science/py-cirq-core: Update 0.12.0 -> 0.13.1
2021-11-14 16:27:22 -08:00
py-cirq-google
science/py-cirq-google: Update 0.12.0 -> 0.13.0
2021-10-17 08:49:41 -07:00
py-cirq-ionq
science/py-cirq-ionq: Update 0.12.0 -> 0.13.1
2021-10-31 10:23:17 -07:00
py-cirq-pasqal
science/py-cirq-pasqal: Update 0.13.0 -> 0.13.1
2021-10-31 10:23:18 -07:00
py-coards
science/py-coards: Cosmetic change
2021-05-12 05:47:18 +08:00
py-DendroPy
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-dipy
science/py-dipy: Update 1.4.0 -> 1.4.1
2021-05-06 10:59:23 -07:00
py-dlib
science/py-dlib: fix build on powerpc64le
2021-04-11 17:08:35 +00:00
py-eccodes
science/py-eccodes: Update to 1.4.0
2022-01-12 02:44:40 +08:00
py-esda
science/py-esda: Add SHAPE option
2021-09-21 11:44:54 +08:00
py-geolinks
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-geomet
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-geometer
science/py-geometer: Update to 0.3.0
2022-01-24 02:50:47 +08:00
py-geometric
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-gpaw
science/py-gpaw: Update 21.6.0 -> 22.1.0
2022-01-13 02:25:40 -08:00
py-GPy
science/py-GPy: Update 1.9.9 -> 1.10.0
2021-05-22 01:33:34 -07:00
py-GPyOpt
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-gsd
science/py-gsd: Update 2.5.0 -> 2.5.1
2022-01-21 02:00:30 -08:00
py-h5json
science/py-h5py: Update to 3.2.1
2021-04-18 13:44:04 +08:00
py-h5py
science/py-h5py: Update to 3.6.0
2021-11-22 05:15:52 +08:00
py-hiphive
science/py-hiphive: New port: High-order force constants for the masses
2021-08-05 09:51:46 -07:00
py-hoomd-blue
science/py-hoomd-blue: Backport patch supporting latest cereal.
2022-01-21 17:37:21 -08:00
py-inequality
science/py-inequality: Update USES=python
2021-11-06 03:14:23 +08:00
py-jupyter_jsmol
science/py-jupyter_jsmol: Remove PY_PYGMENTS
2021-06-21 00:16:17 +08:00
py-kim-query
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-kinematics
science/py-kinematics: Update USES=python
2021-11-06 03:14:24 +08:00
py-kliff
science/py-kliff: Update 0.3.0 -> 0.3.1
2022-01-03 14:26:43 -08:00
py-liac-arff
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-libpysal
science/py-libpysal: Update to 4.5.1
2021-07-06 22:57:09 +08:00
py-lifelines
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-MDAnalysis
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-MDAnalysisTests
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-mdp
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-mmtf-python
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-molmod
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-moltemplate
science/py-moltemplate: Update 2.19.12 -> 2.19.14
2021-12-29 21:15:50 -08:00
py-netCDF4
science/py-netCDF4: Update version 1.3.1=>1.5.7
2021-10-10 10:32:52 -05:00
py-netcdf-flattener
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-nibabel
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-nilearn
science/py-nilearn: Update 0.8.0 -> 0.8.1
2021-09-18 10:48:28 -07:00
py-obspy
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-oddt
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-OpenFermion
science/py-OpenFermion: Update 1.2.0 -> 1.3.0
2021-12-23 17:54:58 -08:00
py-OpenMC
science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation code (Python)
2021-10-11 08:51:36 -07:00
py-openpiv
science/py-openpiv: update to 0.23.8
2021-11-06 00:17:44 +03:00
py-paida
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-paramz
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-phono3py
science/py-phono3py: Remove unnecessary build dependency on math/lapacke
2021-06-08 20:32:22 -07:00
py-phonopy
science/py-phonopy: Update 2.11.0 -> 2.12.0
2022-01-14 14:18:03 -08:00
py-PubChemPy
science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG REST API
2021-07-27 06:16:51 -07:00
py-pupynere
science/py-pupynere: Update USES=python
2021-11-06 03:14:24 +08:00
py-pyaixi
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-pyberny
science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy
2021-10-16 16:56:19 -07:00
py-pycsw
science/py-pycsw: Update to 2.6.1
2021-10-25 23:57:35 +08:00
py-pydicom
science/py-pydicom: Update to 2.2.2
2021-10-12 14:58:13 +08:00
py-PyFR
science/py-PyFR: Update 1.12.2 -> 1.12.3
2021-11-21 16:50:13 -08:00
py-pygeodesy
science/py-pygeodesy: Update to 21.9.16
2021-09-22 06:23:38 +08:00
py-pygeometa
science/py-pygeometa: Update to 0.8.0
2021-09-21 11:44:55 +08:00
py-pygmo2
science/py-pygmo2: Update 2.16.1 -> 2.18.0
2021-08-05 09:51:47 -07:00
py-pyked
devel/py-pint: Update to 0.18
2021-11-01 21:41:43 +08:00
py-pymatgen
science/py-pymatgen: Update 2022.0.15 -> 2022.0.17
2022-01-14 14:18:03 -08:00
py-pymol
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
py-PyNE
science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; Build in parallel
2021-10-10 11:49:56 -07:00
py-pyosf
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-pysal
science/py-pysal: Update to 2.5.0
2021-09-19 14:00:21 +08:00
py-pyscf
science/py-pyscf: Unbreak fetch
2022-01-12 20:40:22 -08:00
py-pyteomics
science/py-pyteomics: Update to 4.5
2021-09-22 06:23:38 +08:00
py-qcelemental
science/py-qcelemental: Update 0.23.0 -> 0.24.0
2021-11-19 13:33:17 -08:00
py-qcengine
science/py-qcengine: Update 0.20.1 -> 0.21.0
2021-11-26 21:26:07 -08:00
py-qspin
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-quantities
science/py-quantities: Update 0.12.5 -> 0.13.0
2022-01-14 08:48:13 -08:00
py-rmf
science/{,py-}rmf: Update 1.3 -> 1.3.1
2021-12-29 21:15:51 -08:00
py-rmsd
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-ruffus
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-scikit-fuzzy
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-scikit-learn
science/py-scikit-learn: Update to 1.0.2
2021-12-26 12:31:19 +08:00
py-scikit-optimize
science/py-scikit-optimize: Update to 0.9.0
2021-10-25 23:57:36 +08:00
py-scikit-sparse
science/py-scikit-sparse: Update 0.4.5 -> 0.4.6
2021-09-13 15:28:57 -07:00
py-scimath
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-scipy
science/py-scipy: fix dependency
2022-01-11 22:01:05 +03:00
py-scoria
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-segregation
science/py-segregation: Update to 2.1.0
2021-09-21 11:44:55 +08:00
py-segyio
science/{,py-}segyio: Update 1.9.7 -> 1.9.8
2021-11-06 16:56:38 -07:00
py-SimpleSpectral
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-skrebate
science/py-skrebate: Update USES=python
2021-11-06 03:14:24 +08:00
py-spaghetti
science/py-spaghetti: Update to 1.6.5
2022-01-24 02:50:48 +08:00
py-spglib
science/[,py-]spglib: Update 1.16.1 -> 1.16.2
2021-08-15 18:32:15 -07:00
py-tensorflow
devel/grpc: Update to 1.42.0
2021-12-22 02:46:21 +08:00
py-tobler
science/py-tobler: Update to 0.8.2
2021-07-06 22:57:14 +08:00
py-veusz
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
pybrain
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
pynn
science/pynn: Update to 0.10.0
2021-12-17 16:18:50 +08:00
qbox
science/qbox: 1.73.3 -> 1.74.1
2022-01-14 08:48:13 -08:00
qcl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
qiskit-aer
devel/libfmt: Update to 8.0.0
2021-07-22 02:11:51 +08:00
qmcpack
*: Clean up some things
2022-01-17 14:20:25 +01:00
quantum-espresso
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
quantum-espresso-pseudopotentials
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
qwalk
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
R-cran-AMORE
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-bayesm
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-cmprsk
science/R-cran-cmprsk: Update to 2.2-11
2022-01-09 06:54:19 +00:00
R-cran-DCluster
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-e1071
science/R-cran-e1071: Update to 1.7-9
2021-09-18 13:18:14 +00:00
R-cran-eco
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-Epi
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-epicalc
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-etm
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-FAdist
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-fastICA
science/R-cran-fastICA: Update to 1.2-3
2021-09-25 18:13:13 -04:00
R-cran-kernlab
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-snow
science/R-cran-snow: Update to 0.4-4
2021-10-28 10:20:03 +00:00
R-cran-som
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-udunits2
science/R-cran-udunits2: Update to 0.13.2
2022-01-09 08:25:52 +00:00
rdkit
science/rdkit: Broken on i386
2022-01-22 01:06:37 -08:00
rmf
science/{,py-}rmf: Update 1.3 -> 1.3.1
2021-12-29 21:15:51 -08:00
rubygem-ai4r
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-cdo
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-rgeo
science/rubygem-rgeo: Update to 2.3.1
2021-12-22 02:54:32 +08:00
rubygem-rgeo-geojson
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-rgeo-proj4
science/rubygem-rgeo-proj4: Update to 3.1.1
2021-11-22 02:24:31 +08:00
rubygem-rgeo-shapefile
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-ruby-dcl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-ruby-netcdf
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
scidavis
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
segyio
science/{,py-}segyio: Update 1.9.7 -> 1.9.8
2021-11-06 16:56:38 -07:00
shelxle
science/shelxle: Update 1.0.1354 -> 1.0.1356
2022-01-20 15:31:42 -08:00
siconos
cleanup: drop support for EOL FreeBSD 11.X
2021-09-30 23:23:30 +02:00
siesta
science/siesta: Broken on aarch64, powerpc* due to lack of IEEE754 support in gcc
2021-05-18 21:07:41 -07:00
sigrok-cli
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
sigrok-firmware
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
sigrok-firmware-fx2lafw
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
sigrok-firmware-utils
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
silo
Fix CONFLICTS entries of multiple ports
2022-01-10 16:15:39 +01:00
simbody
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
simgrid
science/simgrid: Update 3.27 -> 3.28
2021-08-16 00:06:31 -07:00
simint
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
simlib
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
simple-dftd3
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
simsmith
all: Remove all other $FreeBSD keywords.
2021-04-06 16:31:13 +02:00
smoldyn
science/smoldyn: Update 2.66 -> 2.67
2021-11-06 16:56:37 -07:00
sparta
science/sparta: Update 20Oct2021 -> 7Jan2022
2022-01-08 01:09:25 -08:00
spglib
science/[,py-]spglib: Update 1.16.1 -> 1.16.2
2021-08-15 18:32:15 -07:00
step
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
svmlight
science/svmlight: fix build on 13.0+
2021-10-29 18:01:10 +00:00
szip
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
tblite
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
teem
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
tfel
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
tfel-edf
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
thermofun
science/thermofun: Update 0.3.8 -> 0.3.9
2022-01-18 10:42:45 -08:00
tinker
science/tinker: Update 8.9.5 -> 8.10.1
2021-10-11 08:51:36 -07:00
udunits
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
v_sim
INSTALLS_ICONS: retire the macro and rework the related dependencies
2021-10-10 21:44:42 +02:00
vipster
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
vmd
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
voro++
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
votca
science/votca: Update 2021.2 -> 2021.2-18560
2021-09-28 17:49:03 -07:00
wannier90
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
wwplot
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
wxmacmolplt
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xcfun
science/xcfun: fix build on GCC-based systems
2021-06-07 06:38:43 -05:00
xcrysden
framework: Add new USES 'magick' for graphics/ImageMagick*
2021-12-11 14:50:53 +01:00
xdrawchem
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xtb
science/xtb: update to 6.4.1
2021-11-27 11:49:53 -06:00
yoda
science/yoda: Update 1.9.0 -> 1.9.1
2021-09-12 10:27:25 -07:00
Makefile
science/py-hoomd-blue: New port: Molecular dynamics and Monte Carlo soft matter simulation
2022-01-21 02:00:30 -08:00