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ports/biology
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Thierry Thomas 41a8cea837 Unbreak: molden has been updated on Aug 17, with the same DISTNAME. 
Changelog at <http://www.cmbi.ru.nl/molden/HISTORY>.
2006-09-17 13:41:56 +00:00
..
ariadne
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
artemis
- Fix fetch problems
2005-12-05 16:57:26 +00:00
avida
Mark as broken for i386 4.x
2006-08-10 23:02:49 +00:00
babel
- Add SHA256
2005-11-24 00:04:00 +00:00
belvu
Schedule these broken ports for termination on 2006-12-01
2006-09-02 16:51:10 +00:00
biojava
Schedule these broken ports for termination on 2006-12-01
2006-09-02 16:51:10 +00:00
blast
- Update PORTREVISION to match latest release (see main web site)
2006-06-11 09:13:43 +00:00
blat
Add blat 33, a fast tool for local sequence similarity searches.
2006-03-15 10:26:12 +00:00
boinc-simap
- Update to 5.10
2006-07-17 21:44:52 +00:00
chemeq
- Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid
2006-01-19 19:47:59 +00:00
clustalw
SHA256ify
2006-01-22 08:34:46 +00:00
coalesce
- Add SHA256
2005-11-24 00:04:00 +00:00
crimap
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
distribfold
USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than
2006-06-11 15:29:01 +00:00
dna-qc
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
dotter
Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.
2006-08-03 20:28:00 +00:00
embassy
For EMBOSS:
2006-03-31 09:43:21 +00:00
emboss
For EMBOSS:
2006-03-31 09:43:21 +00:00
fasta
Update to 21.u1.d1 (fixes fetch).
2006-05-07 13:04:20 +00:00
fasta3
- Update to 34.t25.d9
2006-06-09 19:18:08 +00:00
fastdnaml
- Add SHA256
2005-11-24 00:04:00 +00:00
finchtv
SHA256ify
2006-01-22 08:34:46 +00:00
fluctuate
- Add SHA256
2005-11-24 00:04:00 +00:00
garlic
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
genpak
- Add SHA256
2005-11-24 00:04:00 +00:00
gff2ps
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
gperiodic
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
grappa
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
hmmer
SHA256ify
2006-01-22 08:34:46 +00:00
jalview
Jalview is a multiple alignment editor written in Java. It is used widely in a
2006-02-13 09:42:13 +00:00
kinemage
Reset jeremy@external.org who has not responded to email asking about
2006-04-05 05:46:33 +00:00
L-Breeder
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
lagan
Add lagan 1.2, efficient tools for large-scale multiple alignments of
2006-03-16 22:31:26 +00:00
lamarc
…
libgenome
- s,INSTALLS_SHLIB,USE_LDCONFIG,g
2006-08-14 10:08:25 +00:00
linux-foldingathome
Folding@Home is a distributed computing project -- people from through out the
2006-08-28 22:33:45 +00:00
lsysexp
- Add MASTER_SITE
2006-06-06 10:07:55 +00:00
mafft
- Update to 5.743
2006-03-19 12:59:16 +00:00
migrate
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
molden
Unbreak: molden has been updated on Aug 17, with the same DISTNAME.
2006-09-17 13:41:56 +00:00
mopac
- Fix pkg-plist [1]
2006-07-10 05:32:58 +00:00
nab
SHA256ify
2006-01-22 08:34:46 +00:00
ncbi-toolkit
Update biology/ncbi-toolkit to the latest release.
2006-06-06 12:05:19 +00:00
ortep3
Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about
2006-04-05 06:13:46 +00:00
p5-AcePerl
- Update to 1.89
2006-05-02 23:16:02 +00:00
p5-Bio-ASN1-EntrezGene
SHA256ify
2006-01-22 08:34:46 +00:00
p5-Bio-Das
SHA256ify
2006-01-22 08:34:46 +00:00
p5-Bio-Phylo
- Updated from 0.07 to 0.12
2006-05-19 23:18:32 +00:00
p5-bioperl
SHA256ify
2006-01-22 08:34:46 +00:00
p5-bioperl-devel
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry
2006-01-22 01:29:46 +00:00
p5-bioperl-run
Bioperl-run contain modules that provides a PERL interface to various
2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel
Bioperl-run contain modules that provides a PERL interface to various
2006-05-02 21:31:43 +00:00
paml
- Update to 3.15
2006-05-20 18:52:19 +00:00
phylip
Put PORTEPOCH back.
2006-02-09 01:17:59 +00:00
platon
- Satisfy portlint
2006-05-06 21:20:59 +00:00
povchem
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
primer3
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
protomol
Add protomol 2.0.3, OO, component based, framework for molecular
2006-05-05 20:09:54 +00:00
psi88
Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about
2006-04-05 06:13:46 +00:00
py-biopython
Update to 1.41
2005-11-11 01:15:35 +00:00
pymol
Fix build on amd64
2006-09-17 11:51:56 +00:00
rasmol
- Add SHA256
2005-11-24 00:04:00 +00:00
recombine
- Add SHA256
2005-11-24 00:04:00 +00:00
ruby-bio
- Update to 1.0.0
2006-04-25 22:09:29 +00:00
seaview
- Update to 2006.02.13
2006-04-05 01:58:03 +00:00
seqio
SHA256ify
2006-01-22 08:34:46 +00:00
sim4
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
t_coffee
Update to 3.27.
2006-02-10 09:45:28 +00:00
tinker
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
treepuzzle
SHA256ify
2006-01-22 08:34:46 +00:00
treeviewx
Update to 0.5.1
2005-12-06 02:00:55 +00:00
tRNAscan-SE
SHA256ify
2006-01-22 08:34:46 +00:00
wise
Remove USE_REINPLACE from all categories starting with B
2006-05-03 23:26:35 +00:00
xdrawchem
Mark as BROKEN on sparc64 due to internal compiler error.
2006-07-03 22:22:09 +00:00
xmolwt
Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about
2006-04-05 06:13:46 +00:00
Makefile
Folding@Home is a distributed computing project -- people from through out the
2006-08-28 22:33:45 +00:00