Jason W. Bacon
b0ab3ea009
Numerous new features, bug fixes and performance enhancements https://github.com/samtools/bcftools/releases/tag/1.11 Reported by: portscout
44 lines
1.3 KiB
Plaintext
44 lines
1.3 KiB
Plaintext
--- Makefile.orig 2020-10-18 13:31:52 UTC
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+++ Makefile
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@@ -45,7 +45,8 @@ OBJS = main.o vcfindex.o tabix.o \
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ccall.o em.o prob1.o kmin.o # the original samtools calling
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PLUGIN_OBJS = vcfplugin.o
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-prefix = /usr/local
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+PREFIX ?= /usr/local
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+prefix = $(PREFIX)
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exec_prefix = $(prefix)
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bindir = $(exec_prefix)/bin
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libdir = $(exec_prefix)/lib
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@@ -58,13 +59,14 @@ pluginpath = $(plugindir)
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# Installation location for $(MISC_PROGRAMS) and $(MISC_SCRIPTS)
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misc_bindir = $(bindir)
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-MKDIR_P = mkdir -p
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-INSTALL = install -p
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-INSTALL_DATA = $(INSTALL) -m 644
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-INSTALL_DIR = $(MKDIR_P) -m 755
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-INSTALL_MAN = $(INSTALL_DATA)
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-INSTALL_PROGRAM = $(INSTALL)
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-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
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+# Use BSD_INSTALL_PROGRAM to strip when WITH_DEBUG not set
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+MKDIR_P = mkdir -p
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+INSTALL = install -p
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+INSTALL_DATA = ${BSD_INSTALL_DATA}
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+INSTALL_DIR = $(MKDIR_P)
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+INSTALL_MAN = ${BSD_INSTALL_MAN}
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+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
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+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
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PROGRAMS = bcftools
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MISC_SCRIPTS = \
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@@ -142,7 +144,7 @@ print-version:
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ifdef USE_GPL
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main.o : EXTRA_CPPFLAGS += -DUSE_GPL
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OBJS += polysomy.o peakfit.o
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- GSL_LIBS ?= -lgsl -lcblas
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+ GSL_LIBS ?= -lgslcblas
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endif
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print-%:
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