Kurt Jaeger
690da7ea38
biology/phrab biology/phred biology/consed Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to obtain the tarballs. PR: 191336 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
35 lines
1.0 KiB
Plaintext
35 lines
1.0 KiB
Plaintext
--- ./makefile.orig 2009-06-02 17:45:34.000000000 +0200
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+++ ./makefile 2014-08-02 12:43:45.000000000 +0200
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@@ -25,8 +25,8 @@
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# Makefile for swat, phrap, cross_match, phrapview; also swprobs (currently inactivated)
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#CC= icc
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#CFLAGS= -O2 -wd266,880
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-CC= cc
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-CFLAGS= -O2
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+CC?= cc
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+#CFLAGS= -O2
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LFLAGS= -lm
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SWATOBJS= swat.o weibull.o
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@@ -55,7 +55,7 @@
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CALFOBJS= calf_merge.o calf_utils.o
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-all: swat phrap cross_match phrapview cluster loco calf_merge
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+all: swat phrap cross_match phrapview pcluster loco calf_merge
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#manyreads:
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# touch swat.h;
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@@ -131,9 +131,9 @@
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$(CC) $(CFLAGS) -o $@ gccross_match.o gccall_subs.o $(CROBJS) $(SCANOBJS) $(SWOBJS) $(JKBSWOBJS) $(LFLAGS)
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chmod o-r gccross_match
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-cluster: makefile $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS)
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+pcluster: makefile $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS)
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$(CC) $(CFLAGS) -o $@ $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS) $(LFLAGS)
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- chmod o-r cluster
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+ chmod o-r pcluster
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loco: makefile $(LOCOOBJS) $(SWOBJS)
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$(CC) $(CFLAGS) -o $@ $(LOCOOBJS) $(SWOBJS) $(LFLAGS)
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