Jason W. Bacon
4a5b8a759b
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository.
36 lines
718 B
Makefile
36 lines
718 B
Makefile
# $FreeBSD$
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PORTNAME= picard
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DISTVERSION= 2.22.9
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CATEGORIES= biology java
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MASTER_SITES= http://github.com/broadinstitute/picard/releases/download/${PORTVERSION}/
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PKGNAMESUFFIX= -tools
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DISTNAME= ${PORTNAME}
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EXTRACT_SUFX= .jar
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= CLI tools for manipulating high-throughput sequencing (HTS) data
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LICENSE= MIT
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RUN_DEPENDS= samtools:biology/samtools
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USE_JAVA= 1.8+
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JAVA_RUN= yes
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SUB_FILES= picard
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NO_BUILD= yes
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NO_ARCH= yes
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PLIST_FILES= bin/picard ${JAVAJARDIR}/picard.jar
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do-extract:
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# No extract
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do-install:
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${INSTALL_DATA} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} \
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${STAGEDIR}${JAVAJARDIR}
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${INSTALL_SCRIPT} ${WRKDIR}/picard ${STAGEDIR}${PREFIX}/bin
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.include <bsd.port.mk>
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