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ports/science
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Sunpoet Po-Chuan Hsieh e319a428b1 Add OPENMPI2 option
2017-02-01 19:43:51 +00:00
..
2d-rewriter
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
afni
science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for
2016-11-29 21:15:41 +00:00
avogadro
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
bddsolve
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
bft
…
bodr
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
brian
math/py-numpy: track PORTEPOCH in consumers
2016-10-28 17:13:24 +00:00
buddy
…
cdcl
Remove libtiff.so.4 compatibility links that were added in r374303 to
2016-12-08 16:07:33 +00:00
cdf
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
cdo
- Add UUID option
2016-12-17 12:57:36 +00:00
cgnslib
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
cgribex
Add JASPER and SZLIB options
2017-01-29 16:04:48 +00:00
checkmol
…
chemical-mime-data
Use USES=pathfix where applicable.
2016-10-21 15:21:13 +00:00
chemtool
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
chemtool-devel
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
clhep
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
2017-01-11 10:08:38 +00:00
colt
The output of tools like awk, date, sort, tr,... depends on the current
2017-01-18 13:20:31 +00:00
crf++
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
dcl
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
devisor
…
dlpoly-classic
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
ecs
Remove useless WRKSRC definitions.
2016-05-25 15:43:34 +00:00
epte
science/epte: Add forgetten patch hunk from previous commit
2016-08-28 05:56:01 +00:00
fastcap
Mark as broken on aarch64: fails to link with sbrk.
2016-11-10 01:21:43 +00:00
fasthenry
Mark as broken on aarch64: fails to link with sbrk.
2016-11-10 01:21:43 +00:00
fisicalab
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
fvcom
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
fvcom-mpi
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
fvm
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
gchemutils
Update gchemutils to 0.14.16.
2016-12-31 19:43:21 +00:00
getdp
getdp builds fine with bsd make
2016-12-10 18:38:34 +00:00
ghemical
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
ghmm
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
gnudatalanguage
Upgrade GDL to 0.9.7v2.
2017-01-15 18:34:52 +00:00
gramps
science/gramps: Update to 4.2.5
2016-12-19 12:52:40 +00:00
grib_api
Update to 1.19.0
2017-01-02 15:11:27 +00:00
gromacs
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
gsmc
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
gtamsanalyzer
…
gwyddion
Most commonly used build systems support silent builds, when they
2016-09-09 19:42:46 +00:00
h5utils
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
harminv
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
hdf
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
hdf5
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
hdf5-18
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
hs-bio
…
InsightToolkit
Fix pkg-plist post r424008
2016-10-15 14:07:24 +00:00
isaac-cfd
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
jstrack
Remove libtiff.so.4 compatibility links that were added in r374303 to
2016-12-08 16:07:33 +00:00
kalzium
Introduce new extensible virtual categories for KDE
2016-10-18 17:22:35 +00:00
kst2
Reassign makc's ports back to the pool.
2016-10-20 15:58:12 +00:00
lamprop
…
libaec
Add libaec 1.0.0
2017-01-01 01:47:21 +00:00
libctl
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
libgeodecomp
add science/libgeodecomp - auto-parallelizing library for computer simulations
2017-01-31 23:37:58 +00:00
libghemical
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
libint
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-11-20 09:38:08 +00:00
libkml
Update to 1.3.0
2017-01-12 20:02:17 +00:00
liblinear
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
liboglappth
…
libquantum
…
libsvm
When there is a do-install target, do not use a post-install target, do
2016-07-19 11:04:13 +00:00
libsvm-python
…
libxc
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
2017-01-11 10:08:38 +00:00
linsmith
…
massxpert
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-11-20 09:38:08 +00:00
mbdyn
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
mcstas
Those ports build fine with bsd make
2016-12-11 08:25:56 +00:00
mcstas-comps
Those ports build fine with bsd make
2016-12-11 08:25:56 +00:00
medit
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
meep
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
2017-01-11 10:08:38 +00:00
mei
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
metaf2xml
The correct way to check for Perl's version is with PERL_LEVEL.
2016-10-27 17:21:09 +00:00
minc2
${RM} already has -f.
2016-10-21 12:51:40 +00:00
mol2ps
…
mpb
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
mpqc
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
mpqc-mpich
…
ncs
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
netcdf
- Update to 4.4.1.1
2016-11-22 18:42:56 +00:00
netcdf-cxx
- Update to 4.3.0
2016-05-15 16:12:00 +00:00
netcdf-fortran
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
nifticlib
Pass -fPIC when building the port's static libraries.
2016-12-28 14:54:37 +00:00
openbabel
science/openbabel: unbreak with GCC >= 6
2017-01-21 23:12:18 +00:00
openkim
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
orthanc
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
orthanc-dicomweb
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
orthanc-postgresql
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
orthanc-webviewer
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
p5-Algorithm-SVMLight
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements
- Update to 1.071
2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-BUFR
- Update to 1.36
2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
…
p5-Geo-WebService-Elevation-USGS
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools
Those ports build fine with bsd make
2016-12-11 08:25:56 +00:00
p5-PerlMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Physics-Unit
Bump PORTREVISION for ports affected by the fix the last commit.
2017-01-31 16:21:45 +00:00
paje
…
paraview
- Update to 5.2.0
2017-01-10 10:59:01 +00:00
pnetcdf
Add OPENMPI2 option
2017-02-01 19:43:51 +00:00
psychopy
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
pulseview
devel/boost-*: update to 1.63.0
2017-01-06 08:45:03 +00:00
py-cdo
- Update to 1.3.2
2016-11-19 17:07:10 +00:00
py-coards
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested.
2016-06-23 09:48:53 +00:00
py-DendroPy
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
py-h5py
- Remove bogus NO_ARCH: this module installs .so files
2016-11-24 14:57:16 +00:00
py-hcluster
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
py-mdp
science/py-mdp: Update version 3.3=>3.5
2016-04-10 19:04:12 +00:00
py-mlpy
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-netCDF4
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
py-obspy
- Update sqlalchemy dependency
2016-12-12 02:28:44 +00:00
py-paida
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
py-pupynere
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested.
2016-06-23 09:48:53 +00:00
py-pyaixi
Convert CC license names to r421995 spellings
2016-09-28 06:38:00 +00:00
py-pydicom
Never set WRKSRC when using USE_GITHUB.
2017-01-03 18:12:13 +00:00
py-pysal
- Update to 1.13.0
2016-12-12 20:58:04 +00:00
py-pyteomics
Update to 3.4
2016-12-01 23:52:38 +00:00
py-pyteomics.biolccc
Reassign makc's ports back to the pool.
2016-10-20 15:58:12 +00:00
py-scikit-fuzzy
- Update to 0.2
2016-06-30 08:09:29 +00:00
py-scikit-learn
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
py-scikit-sparse
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
py-scimath
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-scipy
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
2016-12-07 13:24:56 +00:00
py-ws2300
- Update to 1.10
2016-12-29 01:39:00 +00:00
pybrain
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
pycdf
In several dozen ports, use single space for WWW: line in pkg-descr, and
2016-11-22 14:04:21 +00:00
pynn
- Update to 0.8.2
2016-12-28 08:01:30 +00:00
qcl
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
qtresistors
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
R-cran-AMORE
…
R-cran-bayesm
- Update to 3.0.2
2016-05-26 01:29:33 +00:00
R-cran-cmprsk
…
R-cran-DCluster
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
R-cran-e1071
…
R-cran-eco
…
R-cran-Epi
- Update to 2.7
2016-10-15 04:49:01 +00:00
R-cran-epicalc
…
R-cran-etm
…
R-cran-snow
- Update to 0.4-2
2016-10-16 04:21:12 +00:00
R-cran-som
- Update to 0.3-5.1
2016-07-21 03:18:24 +00:00
rubygem-ai4r
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
rubygem-cdo
- Update to 1.3.2
2016-12-03 19:34:30 +00:00
rubygem-ruby-dcl
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf
science/rubygem-ruby-netcdf: update to 0.7.2
2017-01-02 14:59:14 +00:00
sigrok-cli
Take maintainership.
2016-10-09 21:25:24 +00:00
sigrok-firmware
Take maintainership.
2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.4.
2016-11-03 18:30:42 +00:00
sigrok-firmware-utils
Take maintainership.
2016-10-09 21:25:24 +00:00
silo
Get rid of QT_PREFIX in favour of PREFIX.
2016-12-18 22:06:50 +00:00
simlib
Fix some misspellings that crept in on the last tier-2 cleanup pass.
2016-11-16 09:29:15 +00:00
simsmith
…
step
Introduce new extensible virtual categories for KDE
2016-10-18 17:22:35 +00:00
svmlight
- With license framework, there's no longer need to shove license to docs, pkgmessage and restricted
2017-01-30 09:01:22 +00:00
szip
Add libaec 1.0.0
2017-01-01 01:47:21 +00:00
tfel
- Update to 2.0.4
2017-01-19 18:14:22 +00:00
udunits
Update to 2.2.24
2017-01-25 16:31:27 +00:00
v_sim
Change the site address.
2017-01-16 21:38:39 +00:00
veusz
devel/py-qt4-core: change USE_PYQT from sip_build to sip to fix build
2016-06-14 18:18:54 +00:00
vmd
science/vmd: correct the wording of numpy keyword
2017-01-09 06:03:05 +00:00
voro++
…
xfce4-equake-plugin
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
2017-01-20 20:33:30 +00:00
xmakemol
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
Makefile
add science/libgeodecomp - auto-parallelizing library for computer simulations
2017-01-31 23:37:58 +00:00