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ports/science
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Thierry Thomas b3fbf4dca4 Resurrect hdf5-18, because it is required by french/med and french/aster. 
Two releases of HDF5 are available for download. HDF5-1.10 should read files
created with earlier releases, but problem arise with MED and this version.
2016-11-13 12:32:46 +00:00
..
2d-rewriter
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
afni
- Fix trailing whitespace in pkg-messages
2016-05-19 11:09:14 +00:00
avogadro
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
bddsolve
many ports: mark broken on powerpc64
2016-04-21 16:43:14 +00:00
bft
…
bodr
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
brian
math/py-numpy: track PORTEPOCH in consumers
2016-10-28 17:13:24 +00:00
buddy
…
cdcl
…
cdf
- Bump port revision because of r423146.
2016-10-03 12:27:27 +00:00
cdo
- Use USES=localbase
2016-04-23 06:46:51 +00:00
cgnslib
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
cgribex
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
checkmol
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
chemical-mime-data
Use USES=pathfix where applicable.
2016-10-21 15:21:13 +00:00
chemtool
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
chemtool-devel
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
clhep
science/clhep: Update version 2.2.0.8=>2.3.1.1
2016-04-10 21:01:55 +00:00
colt
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
crf++
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
dcl
…
devisor
…
dlpoly-classic
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
ecs
Remove useless WRKSRC definitions.
2016-05-25 15:43:34 +00:00
epte
science/epte: Add forgetten patch hunk from previous commit
2016-08-28 05:56:01 +00:00
fastcap
Mark as broken on aarch64: fails to link with sbrk.
2016-11-10 01:21:43 +00:00
fasthenry
Mark as broken on aarch64: fails to link with sbrk.
2016-11-10 01:21:43 +00:00
fisicalab
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
fvcom
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
fvcom-mpi
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
fvm
science/fvm: remove optional knob on expired net/lam
2016-07-12 19:37:55 +00:00
gchemutils
Mark various leaf ports broken on aarch64, and, where appropriate, other
2016-11-11 09:31:02 +00:00
getdp
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
ghemical
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
ghmm
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
gnudatalanguage
Remove NLS, DOCS, EXAMPLES and IPV6 from OPTIONS_DEFAULT, they are enabled by default anyway and don't need to be listed
2016-05-23 20:35:01 +00:00
gramps
science/gramps: Update to 4.2.4
2016-09-24 10:42:20 +00:00
grib_api
- Update to 1.14.7
2016-04-17 18:40:09 +00:00
gromacs
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
gsmc
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
gtamsanalyzer
…
gwyddion
Most commonly used build systems support silent builds, when they
2016-09-09 19:42:46 +00:00
h5utils
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
harminv
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
hdf
many ports: mark broken on powerpc64
2016-04-21 16:43:14 +00:00
hdf5
- Fix build with 1.8.x installed
2016-04-23 06:46:55 +00:00
hdf5-18
Resurrect hdf5-18, because it is required by french/med and french/aster.
2016-11-13 12:32:46 +00:00
hs-bio
…
InsightToolkit
Fix pkg-plist post r424008
2016-10-15 14:07:24 +00:00
isaac-cfd
…
jstrack
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
kalzium
Introduce new extensible virtual categories for KDE
2016-10-18 17:22:35 +00:00
kst2
Reassign makc's ports back to the pool.
2016-10-20 15:58:12 +00:00
lamprop
…
libctl
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
libghemical
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
libint
- Update to version 1.1.6
2015-10-24 17:55:23 +00:00
libkml
- Resolve conflict with archivers/minizip: rename libminizip to libkmlminizip
2016-04-07 13:28:46 +00:00
liblinear
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
liboglappth
Remove trailing whitespace from Makefiles, M-X.
2015-10-08 15:12:22 +00:00
libquantum
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
libsvm
When there is a do-install target, do not use a post-install target, do
2016-07-19 11:04:13 +00:00
libsvm-python
…
libxc
- Update to 3.0.0
2016-05-11 15:03:12 +00:00
linsmith
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
massxpert
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
mbdyn
- Update to version 1.7.1 [1]
2016-09-29 20:01:40 +00:00
mcstas
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
mcstas-comps
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
medit
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
meep
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
mei
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
metaf2xml
The correct way to check for Perl's version is with PERL_LEVEL.
2016-10-27 17:21:09 +00:00
minc2
${RM} already has -f.
2016-10-21 12:51:40 +00:00
mol2ps
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
mpb
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
mpqc
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
mpqc-mpich
- Add missing manpage
2015-10-01 07:04:30 +00:00
ncs
science/ncs: remove optional build knob on expired net/lam
2016-07-12 19:38:30 +00:00
netcdf
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
netcdf-cxx
- Update to 4.3.0
2016-05-15 16:12:00 +00:00
netcdf-fortran
- Update to 4.4.4
2016-05-15 16:12:04 +00:00
nifticlib
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
openbabel
Reassign makc's ports back to the pool.
2016-10-20 15:58:12 +00:00
openkim
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
orthanc
- Update to 1.1.0
2016-08-25 17:00:46 +00:00
orthanc-dicomweb
- Update to 0.3
2016-08-25 17:00:58 +00:00
orthanc-postgresql
devel/jsoncpp: bump portrevision for dependent ports for shlib change .0 -> .1
2016-05-17 18:01:15 +00:00
orthanc-webviewer
- Update to 2.2
2016-08-25 17:00:53 +00:00
p5-Algorithm-SVMLight
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-BUFR
- Update to 1.34
2016-08-09 09:06:49 +00:00
p5-Geo-Coordinates-Converter
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
…
p5-Geo-WebService-Elevation-USGS
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
p5-PerlMol
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
p5-Physics-Unit
…
paje
…
paraview
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
pnetcdf
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
psychopy
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
pulseview
Take maintainership.
2016-10-09 21:25:24 +00:00
py-cdo
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-coards
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested.
2016-06-23 09:48:53 +00:00
py-DendroPy
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
py-h5py
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net
2016-06-15 09:04:29 +00:00
py-hcluster
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
py-mdp
science/py-mdp: Update version 3.3=>3.5
2016-04-10 19:04:12 +00:00
py-mlpy
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-netCDF4
- Update to 1.10.0
2016-04-20 20:42:39 +00:00
py-obspy
- Update to 1.0.2
2016-08-08 09:29:31 +00:00
py-paida
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
py-pupynere
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested.
2016-06-23 09:48:53 +00:00
py-pyaixi
Convert CC license names to r421995 spellings
2016-09-28 06:38:00 +00:00
py-pydicom
science/py-pydicom: update 0.9.8 -> 0.9.9, unbreak
2016-11-13 08:12:49 +00:00
py-pysal
math/py-numpy: track PORTEPOCH in consumers
2016-10-28 17:13:24 +00:00
py-pyteomics
- Add LICENSE
2016-11-07 12:24:07 +00:00
py-pyteomics.biolccc
Reassign makc's ports back to the pool.
2016-10-20 15:58:12 +00:00
py-scikit-fuzzy
- Update to 0.2
2016-06-30 08:09:29 +00:00
py-scikit-learn
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-scikit-sparse
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-scimath
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
py-scipy
- Update to 0.18.1
2016-10-06 09:52:39 +00:00
py-ws2300
…
pybrain
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
pycdf
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
pynn
- Update to 0.8.1
2016-10-19 08:53:29 +00:00
qcl
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
qtresistors
Convert tab after WWW: in pkg-descrs to single space as per PHB
2016-05-23 18:36:52 +00:00
R-cran-AMORE
…
R-cran-bayesm
- Update to 3.0.2
2016-05-26 01:29:33 +00:00
R-cran-cmprsk
- Add new port: science/R-cran-cmprsk
2015-11-08 05:46:50 +00:00
R-cran-DCluster
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
R-cran-e1071
…
R-cran-eco
…
R-cran-Epi
- Update to 2.7
2016-10-15 04:49:01 +00:00
R-cran-epicalc
…
R-cran-etm
- Add new port: science/R-cran-etm
2015-11-08 06:15:14 +00:00
R-cran-snow
- Update to 0.4-2
2016-10-16 04:21:12 +00:00
R-cran-som
- Update to 0.3-5.1
2016-07-21 03:18:24 +00:00
rubygem-ai4r
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
rubygem-cdo
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
rubygem-ruby-dcl
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf
Convert USES=gem:autoplist to USES=gem since autoplist is default
2016-04-27 21:57:31 +00:00
sigrok-cli
Take maintainership.
2016-10-09 21:25:24 +00:00
sigrok-firmware
Take maintainership.
2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.4.
2016-11-03 18:30:42 +00:00
sigrok-firmware-utils
Take maintainership.
2016-10-09 21:25:24 +00:00
silo
Cleanup no longer needed CHMOD usage after r424898.
2016-11-02 22:45:14 +00:00
simlib
Mark various leaf ports broken on aarch64, and, where appropriate, other
2016-11-11 09:31:02 +00:00
simsmith
…
step
Introduce new extensible virtual categories for KDE
2016-10-18 17:22:35 +00:00
svmlight
…
szip
- Convert to new test framework
2015-10-01 15:56:21 +00:00
tfel
MFront is a code generator which translates a set of closely related
2016-11-11 16:49:21 +00:00
udunits
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
v_sim
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
veusz
devel/py-qt4-core: change USE_PYQT from sip_build to sip to fix build
2016-06-14 18:18:54 +00:00
vmd
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
2016-04-01 14:25:16 +00:00
voro++
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
…
xmakemol
- Fix trailing whitespace in pkg-descrs, categories [p-x]*
2016-05-19 10:53:05 +00:00
Makefile
Resurrect hdf5-18, because it is required by french/med and french/aster.
2016-11-13 12:32:46 +00:00