biology/star: Fix SIMD issue on non-amd64

Also remove some extraneous build flags from upstream Makefile

PR:             273240
Reported by:    dizzy

biology/star/Makefile

@@ -1,5 +1,6 @@
 PORTNAME=	STAR
 DISTVERSION=	2.7.11a
+PORTREVISION=	1
 CATEGORIES=	biology
 PKGNAMEPREFIX=	rna-
 
@@ -26,7 +27,7 @@ USE_GITHUB=	yes
 GH_ACCOUNT=	alexdobin
 
 WRKSRC_SUBDIR=	source
-MAKE_FLAGS=	HTSLIB=''
+MAKE_FLAGS=	HTSLIB='' CXXFLAGS_SIMD=""
 
 PLIST_FILES=	bin/STAR
 
@@ -44,12 +45,6 @@ post-patch:
 		${WRKSRC}/bam_cat.h \
 		${WRKSRC}/signalFromBAM.h
 
-.include <bsd.port.options.mk>
-
-.if ${ARCH} != amd64
-MAKE_FLAGS+=	CXXFLAGS_SIMD=""
-.endif
-
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/STAR ${STAGEDIR}${PREFIX}/bin
 

biology/star/files/patch-Makefile

@@ -1,6 +1,6 @@
---- Makefile.orig	2022-11-01 14:50:35 UTC
+--- Makefile.orig	2023-08-15 19:21:58 UTC
 +++ Makefile
-@@ -11,6 +11,10 @@ CXXFLAGSextra ?=
+@@ -11,14 +11,19 @@ CXXFLAGSextra ?=
  # user may define the compiler
  CXX ?= g++
  
@@ -9,9 +9,11 @@
 +HTSLIB ?= htslib
 +
  # pre-defined flags
- LDFLAGS_shared := -pthread -Lhtslib -Bstatic -lhts -Bdynamic -lz
- LDFLAGS_static := -static -static-libgcc -pthread -Lhtslib -lhts -lz
-@@ -18,7 +22,8 @@ LDFLAGS_Mac :=-pthread -lz htslib/libhts.a
+-LDFLAGS_shared := -pthread -Lhtslib -Bstatic -lhts -Bdynamic -lz
+-LDFLAGS_static := -static -static-libgcc -pthread -Lhtslib -lhts -lz
++LDFLAGS_shared := -pthread -lhts -lz
++LDFLAGS_static := -static -pthread -lhts -lz
+ LDFLAGS_Mac :=-pthread -lz htslib/libhts.a
  LDFLAGS_Mac_static :=-pthread -lz -static-libgcc htslib/libhts.a
  LDFLAGS_gdb := $(LDFLAGS_shared)