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science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option

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This commit is contained in:
Yuri Victorovich
2020-05-10 21:40:08 +00:00
parent 453bb61ed1
commit 5c90f2375a
2 changed files with 31 additions and 3 deletions
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6
science/ghemical/Makefile
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@@ -3,7 +3,7 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
PORTREVISION= 19
PORTREVISION= 20
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
MASTER_SITE_SUBDIR= release20111012 current
@@ -22,7 +22,6 @@ LIB_DEPENDS= libblas.so:math/blas \
libint.so:science/libint \
liblapack.so:math/lapack \
liboglappth.so:science/liboglappth \
libopenbabel.so:science/openbabel \
libmopac7.so:biology/mopac \
libmpqc.so:science/mpqc
RUN_DEPENDS= xdg-open:devel/xdg-utils
@@ -30,7 +29,7 @@ RUN_DEPENDS= xdg-open:devel/xdg-utils
USES= compiler:c++11-lang fortran gettext gl gmake gnome pathfix \
pkgconfig xorg
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-gtk --enable-threads --enable-openbabel
CONFIGURE_ARGS= --enable-gtk --enable-threads --disable-openbabel # not compatible with OpenBabel-3 so it is disabled
USE_GNOME= cairo gdkpixbuf2 gtk20 libglade2 intltool pangox-compat
USE_GL= gl glu
USE_XORG= x11
@@ -43,5 +42,6 @@ PLIST_SUB= GHEMICAL_VERSION="${PORTVERSION}"
post-patch:
@${REINPLACE_CMD} -e \
's|"mozilla "|"xdg-open "|' ${WRKSRC}/src/gtk_app.cpp
@${REINPLACE_CMD} -e 's|openbabel-2.0|openbabel-3|' ${WRKSRC}/configure # attempt at OpenBabel-3 compatibility
.include <bsd.port.mk>

28
science/ghemical/files/patch-src_filetrans.cpp Normal file
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@@ -0,0 +1,28 @@
attempt at OpenBabel-3 compatibility
--- src/filetrans.cpp.orig 2011-09-14 17:10:38 UTC
+++ src/filetrans.cpp
@@ -38,6 +38,8 @@ using namespace std;
#include <openbabel/data.h>
#include <openbabel/typer.h>
#include <openbabel/obconversion.h>
+#include <openbabel/atom.h>
+#include <openbabel/bond.h>
using namespace std;
using namespace OpenBabel;
@@ -46,6 +48,7 @@ using namespace OpenBabel;
#define FORMAT_PATH (char *) project::appdata_path
#endif // FORMAT_PATH
+#if 0
namespace OpenBabel
{
extern OBAromaticTyper aromtyper;
@@ -55,6 +58,7 @@ namespace OpenBabel
extern OBChainsParser chainsparser;
extern OBIsotopeTable isotab;
}
+#endif
/*################################################################################################*/