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Danilo G. Baio 75a5f7f076 Update Sphinx 
- Repocopy textproc/py-sphinx to textproc/py-sphinx18

  Update it to 1.8.5 (latest version from 1.8.X).
  This version supports Python 2 and 3.
  Add test target.

- textproc/py-sphinx: Update to 3.0.2

  Python 3 only (3.5+).
  Add test target.

- Mk/Uses/python.mk: Add PY_SPHINX

  Shared macro to use with flavors and not break
  ports with USES=python (all versions).

  Python >=3.5  --> textproc/py-sphinx (v3.0.2)
  Python < 3.5  --> textproc/py-sphinx18 (v1.8.5)

  All ports that uses sphinx were changed to use the new variable
  ${PY_SPHINX} in the dependency line, exceptions:

    * Ports that fails to build with sphinx 3.0.2 because of code.
      They are pointing to textproc/py-sphinx18 directly.
      There aren't many ports.

    * Ports that doesn't know Python flavors.

- Add several patches to fix Sphinx consumers

  The most common issues are related with pkg-plist, the output
  files from Sphinx changes between versions, keep this dynamically
  is the better approach.

  This will save time in future sphinx updates.

PR:		245629
Exp-run by:	antoine
2020-05-11 23:51:58 +00:00
..
2d-rewriter
science/2d-rewriter:
2020-03-29 05:55:51 +00:00
afni
science/afni: update to 20.1.06
2020-05-06 08:22:40 +00:00
agrum
science/agrum: fix build on GCC architectures
2020-05-01 02:42:36 +00:00
aircraft-datcom
audio/festvox-cmu_us_slt_arctic, games/flightgear-terragear, graphics/zathura-cb, graphics/zathura-pdf-poppler, graphics/zathura-ps, math/nfft, net/py-mpi4py, science/aircraft-datcom, x11-themes/gnome-icons-luv: reset MAINTAINER
2020-03-02 17:35:42 +00:00
ALPSCore
- Swap back from net/openmpi3 to net/openmpi
2020-04-21 21:26:56 +00:00
antioch
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
apbs
science/apbs: Fix license
2019-05-03 06:15:44 +00:00
atompaw
atompaw is actually fetchable
2020-01-05 11:52:46 +00:00
avogadro2
science/avogadro2: Update 1.91.0 -> 1.93.0
2020-02-06 07:09:42 +00:00
avogadrolibs
science/avogadrolibs: Remove a broken option VTK set to default by mistake
2020-04-27 16:09:56 +00:00
bagel
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
bddsolve
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
berkeleygw
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
bodr
…
brian
Deprecate some ports using deprecated version of python
2020-03-08 17:01:46 +00:00
buddy
…
cdcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
cdf
- Switch to new test framework (note that test currently segfaults)
2019-08-28 09:02:41 +00:00
cdk
New port: science/cdk: Chemistry Development Kit
2020-01-09 16:48:21 +00:00
cdo
Update jasper to 2.0.16
2019-12-27 13:43:00 +00:00
cgnslib
Upgrade to v4.1.1.
2020-03-17 11:01:17 +00:00
cgribex
Update jasper to 2.0.16
2019-12-27 13:43:00 +00:00
checkmol
- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems
2020-03-06 06:26:05 +00:00
chemical-mime-data
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
chemps2
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
chemtool
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chemtool-devel
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chrono
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
clhep
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
clipper
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
code_saturne
Update Sphinx
2020-05-11 23:51:58 +00:00
colt
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
coordgenlibs
science/coordgenlibs: Update 1.4.0 -> 1.4.0-6; Fix the missing file templates.mae problem
2020-05-10 19:36:07 +00:00
cp2k-data
New port: science/cp2k-data: Data for cp2k quantum chemistry package
2019-04-06 16:27:13 +00:00
crf++
…
dalton
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
datawarrior
Deprecate java/openjfx8-devel consumers
2020-03-19 09:33:13 +00:00
dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
devisor
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
dftbplus
Deprecate a few ports
2020-02-23 15:25:53 +00:00
dkh
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
dlib-cpp
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
dlpoly-classic
science/dlpoly-classic: Change dependency to openmpi3
2020-04-12 14:31:17 +00:00
drawxtl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
dvc
Deprecate a few ports
2020-02-23 15:25:53 +00:00
eccodes
Update to 2.17.0
2020-03-28 12:46:34 +00:00
elk
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
elmerfem
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
epte
…
erd
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
erkale
- Update math/armadillo to 9.870.2
2020-05-06 21:19:22 +00:00
erkale-pseudopotentials
science/erkale-pseudopotentials: Update g20190114 -> g20200426
2020-05-07 00:32:03 +00:00
fastcap
…
fasthenry
…
fisicalab
Return theraven's ports to the pool after safekeeping his commit bit.
2020-03-05 20:49:05 +00:00
fleur
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
fsom
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
fvcom
Bump PORTREVISION for science/netcdf-fortran shlib change
2019-08-31 17:11:57 +00:00
fvcom-mpi
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
gabedit
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
gamess-us
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
gchemutils
Remove textproc/gnome-doc-utils.
2020-01-27 19:40:17 +00:00
gdma
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
getdp
- Update to 3.3.0.
2019-12-22 02:28:57 +00:00
ghemical
science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option
2020-05-10 21:40:08 +00:00
ghmm
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gnudatalanguage
There is a bug with GraphicsMagick: see
2019-11-23 18:05:22 +00:00
gpaw-setups
science/gpaw-setups: Update 0.9.11271 -> 0.9.20000
2018-11-21 06:01:05 +00:00
gramps
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
grib_api
Mark CONFLICTS_INSTALL between science/eccodes and science/grib_api
2019-08-31 11:21:16 +00:00
gromacs
science/gromacs: Fix plist when MPI=on
2020-05-05 01:20:18 +00:00
gsmc
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gtamsanalyzer
Move Objective-C ports to the v2 GNUstep ABI.
2019-02-03 15:37:58 +00:00
h5utils
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
h5z-zfp
science/h5z-zfp: Update 0.9.0 -> 1.0.1
2019-06-30 08:34:58 +00:00
harminv
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
hdf
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
hdf5
Revert r529778, ports depending on it were not tested
2020-03-29 20:41:45 +00:00
hdf5-18
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
healpix
Update to 3.47
2019-07-27 11:53:22 +00:00
highfive
science/highfiv: Update 2.2 -> 2.2.1
2020-04-29 07:05:09 +00:00
hypre
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
iboview
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
InsightToolkit
- Update devel/gdcm to 3.0.5.
2020-02-22 23:28:41 +00:00
isaac-cfd
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
jdftx
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
jmol
science/jmol: Update 14.30.1 -> 14.30.2 and unbreak
2020-02-01 03:32:16 +00:00
jstrack
Update to version 3.4.0, which includes updated documentation, links to
2019-10-02 16:14:46 +00:00
kalzium
Update KDE Applications (release-service) to 20.04
2020-04-23 17:00:52 +00:00
kim-api
science/kim-api: Update 2.1.2 -> 2.1.3
2019-08-31 14:45:22 +00:00
kst2
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
lammps
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
lamprop
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
latte
science/latte: Update 1.2.1 -> 1.2.2
2020-05-07 01:02:37 +00:00
libaec
Update to 1.0.4
2019-02-12 21:03:10 +00:00
libccp4
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
libcint
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
libctl
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
libefp
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
libgeodecomp
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
libghemical
Pet portlint (trailing whitespace).
2019-11-08 03:23:25 +00:00
libgridxc
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
libint
science/libint: Update 1-2-1 -> 1-2-1-15
2019-04-28 18:12:59 +00:00
libint2
science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0
2020-01-13 02:54:47 +00:00
libkml
Convert REINPLACE_CMD to patch files
2020-05-08 20:50:41 +00:00
liblinear
…
libmsym
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
liboglappth
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
libquantum
…
libssm
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
libsvm
Convert to UCL & cleanup pkg-message (categories s)
2019-08-14 12:16:12 +00:00
libsvm-python
Bump a few PORTREVISIONs after r498529
2019-04-10 06:18:31 +00:00
libvdwxc
New port: science/libvdwxc: Van der Waals density functional (DFT) library
2019-05-18 05:40:31 +00:00
libxc
science/libxc: remove patch
2020-05-02 20:20:28 +00:00
liggghts
science/liggghts: Remove the unnecessary VTK_DIR
2020-04-27 16:26:42 +00:00
lm
Bump PORTREVISION for devel/protobuf shlib change
2020-01-22 05:53:20 +00:00
luscus
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
madness
Update devel/tbb to 2020.2 and bump dependent port's revisions
2020-04-01 14:14:51 +00:00
maeparser
science/maeparser: Update 1.2.2 -> 1.2.3
2020-03-17 07:19:57 +00:00
massxpert
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
mbdyn
science/mbdyn: use math/metis instead of expired math/metis4 for METIS option
2020-02-22 18:53:40 +00:00
mcstas
Cleanup RLN usage
2019-01-14 14:05:39 +00:00
mcstas-comps
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
mcxtrace
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
mcxtrace-comps
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
mdynamix
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
medit
Unbreak medit.
2019-11-20 20:40:53 +00:00
metaphysicl
science/metaphysicl: 0.5.2 -> 0.6.0
2019-10-13 21:17:17 +00:00
minc2
Update science/netcdf to 4.6.3
2019-03-02 17:45:58 +00:00
mmdb2
science/mmdb2: Update 2.0.19 -> 2.0.20
2020-01-13 03:30:45 +00:00
mmtf-cpp
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
mol2ps
- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems
2020-03-06 06:26:05 +00:00
molgif
Bump PORTREVISION after r517743 to force relinking.
2019-11-16 12:52:39 +00:00
molscript
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
molsketch
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
mpb
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
mpqc
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
msms
…
multiwfn
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
namd
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
nest
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
netcdf
Update to 4.7.3
2019-12-08 16:52:27 +00:00
netcdf-cxx
Update to 4.3.1
2019-09-12 19:06:48 +00:00
netcdf-fortran
Update to 4.5.2
2019-09-26 18:13:09 +00:00
nifticlib
science/nifticlib: fix build
2019-06-08 19:24:18 +00:00
nwchem
science/nwchem: Update to 7.0.0-release
2020-05-07 07:58:36 +00:00
nwchem-data
science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0
2020-05-07 02:54:17 +00:00
octopus
- update libgd to 2.3.0
2020-05-04 21:31:39 +00:00
openbabel
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
openkim
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
openkim-models
Add compiler:c++11-lang to USES to fix build on gcc-based architectures:
2019-08-11 00:13:02 +00:00
opensim-core
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
opensph
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
opsin
science/opsin: Update 3.0.20190208 -> 3.0.20190223
2019-05-11 06:00:09 +00:00
p5-Algorithm-SVMLight
…
p5-Chemistry-3DBuilder
…
p5-Chemistry-Bond-Find
…
p5-Chemistry-Canonicalize
…
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
…
p5-Chemistry-File-Mopac
…
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
…
p5-Chemistry-File-SMARTS
…
p5-Chemistry-File-SMILES
…
p5-Chemistry-File-VRML
…
p5-Chemistry-File-XYZ
…
p5-Chemistry-FormulaPattern
…
p5-Chemistry-InternalCoords
…
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
…
p5-Chemistry-Mok
…
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
…
p5-Chemistry-Reaction
…
p5-Chemistry-Ring
…
p5-Geo-BUFR
Update to 1.37
2019-02-17 19:39:21 +00:00
p5-Geo-Coordinates-Converter
Add NO_ARCH
2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea
Cosmetic change
2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS
- Update to 0.117
2020-04-18 08:35:03 +00:00
p5-Mcstas-Tools
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
p5-PerlMol
science/p5-PerlMol: Do not set BUILD_DEPENDS twice
2019-01-08 16:00:58 +00:00
p5-Physics-Unit
…
packmol
science/packmol: Pack molecules in defined regions of space
2019-09-22 19:06:43 +00:00
pagmo2
Update devel/tbb to 2020.2 and bump dependent port's revisions
2020-04-01 14:14:51 +00:00
paje
Move Objective-C ports to the v2 GNUstep ABI.
2019-02-03 15:37:58 +00:00
paraview
Deprecate some ports using deprecated version of python
2020-03-08 17:01:46 +00:00
pcmsolver
science/pcmsolver: fix build on GCC architectures
2019-10-27 19:19:07 +00:00
PETSc
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
plumed
Add compiler:c++11-lang to USES to fix build on GCC-based systems:
2020-05-06 12:00:53 +00:00
pnetcdf
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
pulseview
science/pulseview: Use buildtools, linguisttools as build dependencies.
2020-05-10 12:13:52 +00:00
py-abipy
science/py-abipy: Unbreak
2020-03-31 05:50:30 +00:00
py-asdf
Update to 2.6.0
2020-04-24 18:03:39 +00:00
py-ase
science/py-ase: Update 3.19.0 -> 3.19.1
2020-04-04 07:30:04 +00:00
py-avogadrolibs
science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0
2020-02-06 07:17:20 +00:00
py-cdo
Update to 1.5.3
2019-06-25 20:52:05 +00:00
py-chainer
science/py-chainer: Update 7.1.0 -> 7.2.0
2020-02-15 03:59:09 +00:00
py-chainer-chemistry
science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0
2019-12-22 03:10:17 +00:00
py-chempy
science/py-chempy: Update 0.7.9 -> 0.7.10
2020-03-07 20:47:22 +00:00
py-coards
Bump a few PORTREVISIONs after r498529
2019-04-10 06:18:31 +00:00
py-DendroPy
Convert to UCL & cleanup pkg-message (categories s)
2019-08-14 12:16:12 +00:00
py-dlib
science/dlib-cpp and science/py-dlib: Update to 19.19.
2020-02-12 17:28:11 +00:00
py-eccodes-python
Update to 0.9.5
2020-01-17 16:40:13 +00:00
py-geolinks
Add py-geolinks 0.2.0
2020-01-18 18:23:32 +00:00
py-geomet
Add py-geomet 0.2.1
2019-12-29 12:46:17 +00:00
py-geometer
Update to 0.2.2
2020-02-17 19:43:41 +00:00
py-gpaw
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
py-GPy
science/py-GPy: Change to USES=python because it builds fine with python-3.7
2020-04-08 06:35:03 +00:00
py-GPyOpt
science/py-GPyOpt: Update 1.2.5 -> 1.2.6
2020-04-08 06:39:07 +00:00
py-gsd
science/py-gsd: Update 1.9.3 -> 1.10.0
2020-01-03 03:58:46 +00:00
py-h5json
New port: science/py-h5json: Tools and library for representing HDF5 in JSON
2020-01-26 10:07:36 +00:00
py-h5py
Update to 2.10.0
2019-09-07 22:44:39 +00:00
py-kim-query
New port: science/py-kim-query: Helper routines for querying the OpenKIM repository
2020-05-03 19:38:33 +00:00
py-kinematics
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-kliff
New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework
2020-05-03 20:58:00 +00:00
py-lifelines
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-MDAnalysis
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-MDAnalysisTests
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-mdp
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-mlpy
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-mmtf-python
…
py-molmod
science/py-molmod: Update 1.4.4 -> 1.4.5
2019-10-12 16:44:38 +00:00
py-netCDF4
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-obspy
- Update to 1.2.1
2020-03-12 03:58:15 +00:00
py-oddt
science/py-oddt: Update 0.6 -> 0.7
2019-12-27 05:12:21 +00:00
py-OpenFermion
science/py-OpenFermion: Update 0.10.0 -> 0.11.0
2020-04-07 21:49:28 +00:00
py-openpiv
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-paida
…
py-paramz
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-phono3py
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
py-phonopy
science/py-phonopy: Update 2.2.0 -> 2.3.0
2019-08-31 06:06:51 +00:00
py-pupynere
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-pyaixi
Bump a few PORTREVISIONs after r498529
2019-04-10 06:18:31 +00:00
py-pycsw
Add py-pycsw 2.4.2
2020-01-18 18:23:39 +00:00
py-pydicom
- Update to 1.4.2
2020-04-22 08:01:18 +00:00
py-PyFR
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-pygeodesy
Fix build with Python 3
2018-12-08 15:43:07 +00:00
py-pygeometa
Add py-pygeometa 0.5.0
2020-01-18 18:23:44 +00:00
py-pymatgen
science/py-pymatgen: fix build on GCC architectures
2020-01-23 10:44:41 +00:00
py-pymol
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-pyosf
…
py-PyQuante
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-pysal
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-pyteomics
Update to 4.2
2020-03-01 06:49:00 +00:00
py-qcelemental
science/py-qcelemental: Update 0.11.0 -> 0.12.0
2020-01-12 21:07:37 +00:00
py-qcengine
science/py-qcengine: Update 0.8.2 -> 0.10.0
2019-08-31 06:12:38 +00:00
py-qspin
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-quantities
science/py-quantities: Update 0.12.3 -> 0.12.4
2020-01-12 07:24:33 +00:00
py-rmf
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-rmsd
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-ruffus
science/py-ruffus: Update to 2.8.3
2019-08-15 21:30:19 +00:00
py-scikit-fuzzy
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-scikit-learn
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-scikit-optimize
Add PLOTS option
2020-04-22 21:28:17 +00:00
py-scikit-sparse
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-scimath
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-scipy
Revert r524969 and unbreak bulk -a
2020-02-02 16:40:43 +00:00
py-scoria
science/py-scoria: Update 1.0.4 -> 1.0.5
2020-03-28 04:04:51 +00:00
py-SimpleSpectral
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
py-spglib
science/py-spglib: Update 1.13.0 -> 1.14.1
2019-08-31 15:13:52 +00:00
py-tensorflow
devel/icu: update to 67.1
2020-04-23 20:14:49 +00:00
py-veusz
Update py-sip to 4.19.21 and qscintilla2 to 2.11.4
2020-04-11 05:04:40 +00:00
py-ws2300
Deprecate a few ports
2020-02-23 15:25:53 +00:00
pybrain
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
pynn
- Update to 0.9.5
2020-02-22 15:05:40 +00:00
qbox
science: Update 1.69.1 -> 1.71.0
2020-05-09 07:33:58 +00:00
qcl
Update devel/readline to 8.0
2019-04-09 14:04:49 +00:00
qiskit-aer
devel/libfmt: Update to 6.2.1
2020-05-10 07:43:44 +00:00
qmcpack
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
quantum-espresso
science/quantum-espresso: Update 6.4.1 -> 6.5
2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
qwalk
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
R-cran-AMORE
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-bayesm
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-cmprsk
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-DCluster
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-e1071
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-eco
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-Epi
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-epicalc
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-etm
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-FAdist
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-fastICA
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-kernlab
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-snow
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-som
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-udunits2
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
rdkit
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
rmf
Fix build with hdf5 1.10.6
2020-01-01 16:31:57 +00:00
rubygem-ai4r
…
rubygem-cdo
Update to 1.5.0
2019-02-16 22:54:45 +00:00
rubygem-rgeo
Update to 2.1.1
2019-08-28 23:53:27 +00:00
rubygem-rgeo-geojson
Cosmetic change
2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
Update version requirement of RUN_DEPENDS
2019-08-28 23:53:32 +00:00
rubygem-rgeo-shapefile
Update to 2.0.1
2019-04-05 22:45:42 +00:00
rubygem-ruby-dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
Update science/netcdf to 4.6.3
2019-03-02 17:45:58 +00:00
scidavis
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
siesta
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
sigrok-cli
science/sigrok-cli: Update to version 0.7.1
2018-11-03 12:53:26 +00:00
sigrok-firmware
…
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.7
2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
…
silo
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
simbody
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
simgrid
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
simint
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
simlib
Remove compatibility code for FreeBSD < 11.2 from all ports.
2018-11-02 13:32:34 +00:00
simsmith
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
smoldyn
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
sparta
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
spglib
science/spglib: 1.11.2.1 -> 1.12.2
2019-02-10 01:33:34 +00:00
step
Update KDE Applications (release-service) to 20.04
2020-04-23 17:00:52 +00:00
svmlight
…
szip
Update to 2.1.1
2019-02-24 17:56:03 +00:00
teem
Clean up LIB_DEPENDS
2019-06-16 16:05:28 +00:00
tfel
science/tfel: update to version 3.3
2019-12-21 19:53:14 +00:00
tinker
science/tinker: Update 8.7.1 -> 8.7.2
2019-11-29 07:44:51 +00:00
udunits
Install texinfo files (GNU info) into ${PREFIX}/share/info
2018-11-10 18:12:57 +00:00
v_sim
Make fetchable again.
2019-11-19 21:38:47 +00:00
vipster
science/vipster: Update 1.18b-75 -> 1.18b-174
2020-05-07 16:08:27 +00:00
vmd
Return dbn's ports to the pool after safekeeping his commit bit.
2020-02-03 20:21:08 +00:00
voro++
science/voro++: Add shared library
2018-11-04 15:52:42 +00:00
votca
Add compiler:c++14-lang to USES to fix build on GCC-based systems:
2020-05-06 12:04:05 +00:00
wannier90
science/wannier90: Update 3.0.0 -> 3.1.0
2020-03-08 02:34:49 +00:00
wwplot
science/wwplot: Update 0.0.7 -> 0.0.8
2020-01-25 17:53:30 +00:00
wxmacmolplt
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
xcrysden
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
xdrawchem
Bump PORTREVISION for ports depending on the canonical version of GCC
2019-07-26 20:46:53 +00:00
xfce4-equake-plugin
science/xfce4-equake-plugin: fix build on GCC architectures
2019-10-02 14:02:33 +00:00
yoda
science/yoda: Update 1.7.7 -> 1.8.0
2020-01-19 09:06:26 +00:00
Makefile
Remove expired ports:
2020-05-05 15:38:11 +00:00