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Yuri Victorovich 82eb4ffa97 science/chrono: Update 5.0.1 -> 6.0.0 
Also add port options for optional modules defined by the project.
2021-02-12 11:13:40 +00:00
..
2d-rewriter
science/2d-rewriter:
2020-03-29 05:55:51 +00:00
abinit
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
afni
science/afni: Update to 21.0.07
2021-02-09 22:12:49 +00:00
agrum
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
aircraft-datcom
science/aircraft-datcom: Unbreak build with GCC 10
2020-07-04 11:07:57 +00:00
ALPSCore
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
antioch
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
apbs
science/apbs: fix build on current
2020-08-27 18:37:59 +00:00
atompaw
science/atompaw: Update 4.1.0.6 -> 4.1.1.0
2021-01-29 21:59:39 +00:00
avogadro2
science/avogadro2: Update 1.91.0 -> 1.93.0
2020-02-06 07:09:42 +00:00
avogadrolibs
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
axom
New port: science/axom: Infrastructure for development of multi-physics applications and tools
2020-10-09 03:42:21 +00:00
bagel
Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas.
2020-06-14 09:14:03 +00:00
bddsolve
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
berkeleygw
Mark BROKEN on i386 and GCC 10:
2020-11-17 21:37:49 +00:00
bodr
…
buddy
…
cdcl
science/cdcl: fix build on recent current
2020-08-28 16:09:15 +00:00
cdf
science/cdf: Unbreak build with GCC 10
2020-07-04 10:40:42 +00:00
cdk
New port: science/cdk: Chemistry Development Kit
2020-01-09 16:48:21 +00:00
cdo
Update to 1.9.10
2021-01-30 12:21:21 +00:00
cgnslib
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
2020-12-26 11:48:36 +00:00
cgribex
science/cgribex: fix build on powerpc64le, powerpc64 with CPUTYPE=power6 and newer with Clang
2021-01-27 13:16:16 +00:00
checkmol
- lang/fpc revert way like linker is taken by fpc compiler
2021-01-14 21:11:15 +00:00
chemical-mime-data
Prefer graphics/ligvrsvg2-rust over graphics/librsvg2
2020-11-09 17:08:12 +00:00
chemps2
science/chemps2: Update 1.8.9 -> 1.8.10
2021-02-01 09:53:54 +00:00
chemtool
science/chemtool: Update dependency transfig:print/transfig -> fig2dev:print/fig2dev
2020-10-18 17:53:03 +00:00
chemtool-devel
science/chemtool-devel: replace transfig with fig2dev
2020-10-18 20:10:56 +00:00
chrono
science/chrono: Update 5.0.1 -> 6.0.0
2021-02-12 11:13:40 +00:00
clhep
…
clipper
…
code_saturne
Remove PY_SPHINX from ports using Python 3
2021-01-14 14:34:38 +00:00
colt
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
conduit
science/conduit: Update 0.5.1 -> 0.6.0
2020-11-03 19:57:57 +00:00
coordgenlibs
science/coordgenlibs: Update 1.4.1 -> 1.4.2
2020-10-14 08:11:18 +00:00
cp2k
Update GCC_DEFAULT from 9 to 10.
2021-01-13 23:03:31 +00:00
cp2k-data
science/cp2k-data: Update 6.1.0 -> 7.1.0
2020-05-25 04:00:02 +00:00
crf++
Clean up some things
2020-09-24 08:50:25 +00:00
dalton
science/dalton: Update 2018.2 -> 2020.0
2020-11-16 02:14:25 +00:00
dcl
science/dcl: Unbreak build with GCC 10
2020-07-04 06:54:39 +00:00
devisor
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
dftbplus
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:28:16 +00:00
dkh
…
dlib-cpp
science/dlib-cpp: fix build on powerpc64le
2021-01-11 14:07:58 +00:00
drawxtl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
dvc
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
eccodes
Update to 2.20.0
2021-01-30 12:21:28 +00:00
elk
science/elk: Not broken any more.
2021-01-05 07:42:49 +00:00
elmerfem
Update GCC_DEFAULT from 9 to 10.
2021-01-13 23:03:31 +00:00
epte
science/epte: fix build on recent current
2020-08-28 20:59:08 +00:00
erd
…
ergo
Some days it does not pay to get out of bed.
2020-05-15 04:25:56 +00:00
erkale
math/armadillo: Update to 10.1.1
2020-10-29 22:30:44 +00:00
erkale-pseudopotentials
science/erkale-pseudopotentials: Update g20190114 -> g20200426
2020-05-07 00:32:03 +00:00
fastcap
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
2021-01-01 23:51:48 +00:00
fasthenry
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
2021-01-01 23:51:48 +00:00
fastjet
science/fastjet: Enable plugins; Fix the config program
2020-05-26 17:10:15 +00:00
fisicalab
Add education virtual category
2020-11-20 07:16:06 +00:00
fsom
…
fvcom
Bump PORTREVISION for science/netcdf-fortran shlib change
2019-08-31 17:11:57 +00:00
fvcom-mpi
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
gabedit
science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13
2020-09-20 22:12:22 +00:00
gamess-us
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
gchemutils
science/openbabel: Upgrade 2.4.1 -> 3.1.1
2021-01-13 00:31:38 +00:00
gdma
…
getdp
Fix r561520
2021-01-26 17:56:08 +00:00
ghemical
science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option
2020-05-10 21:40:08 +00:00
ghmm
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gnudatalanguage
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
gpaw-setups
…
gramps
Prefer graphics/ligvrsvg2-rust over graphics/librsvg2
2020-11-09 17:08:12 +00:00
grib_api
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
gromacs
science/gromacs: Update 2020.4 -> 2020.5
2021-01-09 10:33:49 +00:00
gsmc
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gtamsanalyzer
…
h5utils
…
h5z-zfp
…
harminv
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
hdf
Add workaround for Fortran frontend to GCC 10.
2020-11-17 22:21:03 +00:00
hdf5
Revert r529778, ports depending on it were not tested
2020-03-29 20:41:45 +00:00
hdf5-18
…
healpix
Bump PORTREVISION for astro/cfitsio shlib change
2021-01-26 14:00:17 +00:00
hepmc3
science/hepmc3: Update 3.2.2 -> 3.2.3
2020-12-17 04:23:50 +00:00
highfive
science/highfive: Update 2.2.1 -> 2.2.2
2020-08-03 03:29:56 +00:00
hypre
science/hypre: Update 2.19.0 -> 2.20.0
2020-09-25 19:01:00 +00:00
iboview
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
InsightToolkit
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
isaac-cfd
science/isaac-cfd: Unbreak build with GCC 10
2020-07-04 08:00:41 +00:00
jdftx
science/jdftx: Update 1.5.0 -> 1.6.0
2020-06-15 20:29:51 +00:00
jmol
science/jmol: Update 14.31.28 -> 14.31.29
2021-02-02 17:14:59 +00:00
jstrack
Update to version 3.4.0, which includes updated documentation, links to
2019-10-02 16:14:46 +00:00
kalzium
Update KDE Release-Service to 20.12.2
2021-02-04 19:21:17 +00:00
kim-api
science/kim-api: Update 2.2.0 -> 2.2.1
2020-12-14 05:31:14 +00:00
kst2
Bump PORTREVISION for astro/cfitsio shlib change
2021-01-26 14:00:17 +00:00
lammps
science/lammps: Update 30Nov2020 -> 24Dec2020
2020-12-24 21:05:44 +00:00
lamprop
science/lamprop:
2021-01-06 16:06:28 +00:00
latte
Do not include bsd.port.mk twice
2020-12-08 09:30:36 +00:00
libaec
Use upstream release tarball
2021-02-06 20:44:01 +00:00
libccp4
Add education virtual category
2020-11-20 07:16:06 +00:00
libcint
science/libcint: Update 4.0.6 -> 4.0.7
2020-12-20 01:00:36 +00:00
libctl
science/libctl: Update to 4.5.0
2020-10-31 15:59:08 +00:00
libefp
…
libgeodecomp
Modify cad/scotch to support int64.
2020-12-09 19:29:19 +00:00
libghemical
Pet portlint (trailing whitespace).
2019-11-08 03:23:25 +00:00
libgridxc
Fix r561520
2021-01-26 17:56:12 +00:00
libint
…
libint2
science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0
2020-01-13 02:54:47 +00:00
libkml
Convert REINPLACE_CMD to patch files
2020-05-08 20:50:41 +00:00
liblinear
Update to 2.42
2020-11-08 17:11:37 +00:00
libmsym
…
liboglappth
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
libquantum
…
libssm
…
libsvm
…
libsvm-python
…
libvdwxc
…
libxc
science/libxc: remove patch
2020-05-02 20:20:28 +00:00
liggghts
science/liggghts: Remove the unnecessary VTK_DIR
2020-04-27 16:26:42 +00:00
luscus
science/openbabel: Upgrade 2.4.1 -> 3.1.1
2021-01-13 00:31:38 +00:00
madness
science/madness: Make TBB dependency optional, OFF by default until the upstream fixes oneTBB support
2021-01-15 18:35:59 +00:00
maeparser
science/maeparser: Update 1.2.3 -> 1.2.4
2020-10-14 08:15:26 +00:00
massxpert
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
2020-05-28 08:43:29 +00:00
mbdyn
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:36:02 +00:00
mcstas
…
mcstas-comps
…
mcxtrace
…
mcxtrace-comps
…
mdynamix
Do not include bsd.port.mk twice
2021-02-01 19:54:12 +00:00
medit
Unbreak medit.
2019-11-20 20:40:53 +00:00
metaphysicl
science/metaphysicl: 0.5.2 -> 0.6.0
2019-10-13 21:17:17 +00:00
minc2
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
mmdb2
science/mmdb2: Update 2.0.19 -> 2.0.20
2020-01-13 03:30:45 +00:00
mmtf-cpp
…
mol2ps
- lang/fpc revert way like linker is taken by fpc compiler
2021-01-14 21:11:15 +00:00
molgif
Bump PORTREVISION after r517743 to force relinking.
2019-11-16 12:52:39 +00:00
molscript
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
molsketch
science/openbabel: Upgrade 2.4.1 -> 3.1.1
2021-01-13 00:31:38 +00:00
mpb
science/mpb: Update to 1.11.1
2020-10-31 16:00:18 +00:00
mpqc
devel/doxygen: Update to 1.9.0
2021-01-08 07:47:02 +00:00
msms
…
multiwfn
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
namd
…
nest
science/nest: Update 2.20.0 -> 2.20.1
2020-12-06 09:22:22 +00:00
netcdf
Update to 4.7.4
2021-01-26 14:03:53 +00:00
netcdf-cxx
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
netcdf-fortran
Update to 4.5.3
2021-01-26 14:04:11 +00:00
nifticlib
…
nwchem
science/nwchem: Update 7.0.1 -> 7.0.2
2020-10-15 06:41:02 +00:00
nwchem-data
science/nwchem-data: Update 7.0.1 -> 7.0.2
2020-10-14 08:19:21 +00:00
octopus
science/octopus: Update 10.1 -> 10.3
2021-01-12 07:49:47 +00:00
openbabel
science/openbabel: Update 2.4.1 -> 3.1.1
2021-01-13 04:02:26 +00:00
openkim
…
openkim-models
science/openkim-model: Update 2019-07-25 -> 2021-01-28
2021-01-29 18:27:12 +00:00
opensim-core
Move devel/swig30 to devel/swig and update to 4.0.1
2020-06-17 18:17:45 +00:00
opensph
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
opsin
…
p5-Algorithm-SVMLight
…
p5-Chemistry-3DBuilder
…
p5-Chemistry-Bond-Find
…
p5-Chemistry-Canonicalize
…
p5-Chemistry-Elements
Update to 1.074
2021-01-26 17:54:46 +00:00
p5-Chemistry-File-MDLMol
…
p5-Chemistry-File-Mopac
…
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
…
p5-Chemistry-File-SMARTS
…
p5-Chemistry-File-SMILES
…
p5-Chemistry-File-VRML
…
p5-Chemistry-File-XYZ
…
p5-Chemistry-FormulaPattern
…
p5-Chemistry-InternalCoords
…
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
…
p5-Chemistry-Mok
…
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
…
p5-Chemistry-Reaction
…
p5-Chemistry-Ring
…
p5-Geo-BUFR
Update to 1.38
2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
Add NO_ARCH
2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea
Cosmetic change
2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS
Update to 0.118
2021-01-26 17:54:51 +00:00
p5-Mcstas-Tools
…
p5-PerlMol
…
p5-Physics-Unit
…
packmol
science/packmol: Pack molecules in defined regions of space
2019-09-22 19:06:43 +00:00
pagmo2
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
paje
…
pcmsolver
science/pcmsolver: Update 1.2.3 -> 1.3.0
2020-12-03 10:49:31 +00:00
PETSc
Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x.
2020-12-16 16:19:30 +00:00
plumed
science/plumed: Update 2.6.2 -> 2.7.0
2021-01-03 06:32:47 +00:00
pnetcdf
Cosmetic change
2021-01-26 17:22:01 +00:00
pulseview
science/pulseview: prepare for Qt5-5.15
2020-05-30 10:09:51 +00:00
py-abipy
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-access
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-asdf
Update to 2.7.2
2021-01-26 17:37:23 +00:00
py-ase
science/py-ase: Update 3.21.0 -> 3.21.1
2021-01-29 16:38:20 +00:00
py-avogadrolibs
Mark BROKEN
2020-12-25 09:16:26 +00:00
py-cdo
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-chainer
Bump PORTREVISION for devel/protobuf shlib change
2021-01-26 14:01:09 +00:00
py-chainer-chemistry
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-chempy
science/py-chempy: Update 0.7.12 -> 0.8.1
2020-12-06 22:32:36 +00:00
py-coards
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-DendroPy
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-dipy
New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging
2021-01-21 03:21:18 +00:00
py-dlib
science/py-dlib: fix build on powerpc64le
2021-01-25 12:59:42 +00:00
py-eccodes
Convert to test framework
2021-02-06 20:47:09 +00:00
py-esda
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-geolinks
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-geomet
Update to 0.3.0
2021-01-30 12:25:36 +00:00
py-geometer
Update to 0.2.3
2020-07-09 18:09:16 +00:00
py-geometric
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-gpaw
Relax hardcoded paths to fix build with Python 3.8.7
2020-12-24 13:46:01 +00:00
py-GPy
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-GPyOpt
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-gsd
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-h5json
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-h5py
Update to 3.1.0
2021-01-26 17:37:37 +00:00
py-inequality
Add py-inequality 1.0.0
2021-01-03 19:58:04 +00:00
py-jupyter_jsmol
Upgrade to v0.2.6.
2021-01-29 18:37:56 +00:00
py-kim-query
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-kinematics
Remove py-pytest-runner from BUILD_DEPENDS
2021-01-10 23:14:07 +00:00
py-kliff
science/py-kliff: Update 0.1.6 -> 0.1.7
2020-12-23 00:56:10 +00:00
py-liac-arff
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-libpysal
Update to 4.4.0
2021-02-03 19:49:19 +00:00
py-lifelines
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-MDAnalysis
Unbreak bulk -a
2020-06-13 15:05:44 +00:00
py-MDAnalysisTests
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-mdp
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-mmtf-python
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-molmod
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-moltemplate
science/py-moltemplate: Update 2.19.4 -> 2.19.5
2021-02-07 23:14:39 +00:00
py-netCDF4
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
py-netcdf-flattener
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-nibabel
New port: science/py-nibabel: Read/write some common neuroimaging file formats
2021-01-21 02:07:06 +00:00
py-nilearn
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:37:02 +00:00
py-obspy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-oddt
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-OpenFermion
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-openpiv
science/py-openpiv: update to 0.23.4
2021-01-27 06:26:23 +00:00
py-paida
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-paramz
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-phono3py
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-phonopy
science/py-phonopy: Update 2.9.0 -> 2.9.1
2021-01-30 10:43:11 +00:00
py-pupynere
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pyaixi
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pycsw
Update to 2.6.0
2020-12-19 20:10:44 +00:00
py-pydicom
- Update to 2.1.2
2020-12-12 00:54:58 +00:00
py-PyFR
science/py-PyFR: Update 1.9.0 -> 1.10.0
2020-05-29 05:48:10 +00:00
py-pygeodesy
Update to 21.1.21
2021-01-30 12:25:47 +00:00
py-pygeometa
Update to 0.6.0
2021-01-26 17:37:42 +00:00
py-pygmo2
science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139
2020-09-19 19:55:21 +00:00
py-pymatgen
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-pymol
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
py-pyosf
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pysal
Update to 2.3.0
2021-02-01 19:35:52 +00:00
py-pyteomics
Update to 4.4.1
2021-01-26 17:37:47 +00:00
py-qcelemental
science/py-qcelemental: Update 0.16.0 -> 0.17.0
2020-10-04 19:57:16 +00:00
py-qcengine
science/py-qcengine: Update 0.16.0 -> 0.17.0
2020-10-04 19:57:59 +00:00
py-qspin
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-quantities
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-rmf
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-rmsd
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-ruffus
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-scikit-fuzzy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-scikit-learn
- Update WWW
2020-06-17 09:35:01 +00:00
py-scikit-optimize
Update to 0.8.1
2020-09-06 15:37:09 +00:00
py-scikit-sparse
Relax hardcoded paths to fix build with Python 3.8.7
2020-12-24 13:46:01 +00:00
py-scimath
Unbreak bulk -a
2020-10-20 07:02:56 +00:00
py-scipy
science/py-scipy: Update 1.5.4 -> 1.6.0
2021-01-23 05:37:12 +00:00
py-scoria
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-segregation
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
2021-01-30 13:29:58 +00:00
py-segyio
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-SimpleSpectral
…
py-spaghetti
Update to 1.5.6
2021-02-03 19:49:25 +00:00
py-spglib
science/py-spglib: Update 1.16.0 -> 1.16.1
2021-02-01 04:28:32 +00:00
py-tensorflow
Bump PORTREVISION for devel/re2 shlib change
2021-02-03 19:46:35 +00:00
py-tobler
Update to 0.7.0
2021-02-03 19:49:32 +00:00
py-veusz
Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to 12.8.1
2020-12-15 17:56:00 +00:00
pybrain
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
pynn
- Update to 0.9.6
2020-12-31 08:19:47 +00:00
qbox
science/qbox: Update 1.72.2 -> 1.72.3
2020-12-15 06:01:05 +00:00
qcl
…
qiskit-aer
devel/libfmt: Update to 7.0.3
2020-09-07 21:19:41 +00:00
qmcpack
science/qmcpack: Update 3.9.2 -> 3.10.0
2020-11-13 05:10:06 +00:00
quantum-espresso
science/quantum-espresso: Update 6.6 -> 6.7.0
2020-12-03 20:51:28 +00:00
quantum-espresso-pseudopotentials
…
qwalk
…
R-cran-AMORE
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-bayesm
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-cmprsk
- Update to 2.2-10
2020-06-14 12:16:54 +00:00
R-cran-DCluster
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-e1071
- Update to 1.7-4
2020-10-17 14:19:29 +00:00
R-cran-eco
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-Epi
- Update to 2.43
2021-01-30 04:53:09 +00:00
R-cran-epicalc
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-etm
- Update to 1.1.1
2020-09-09 08:59:47 +00:00
R-cran-FAdist
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-fastICA
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-kernlab
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-snow
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-som
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-udunits2
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
rdkit
science/rdkit: Update 2020.09.3 -> 2020.09.4
2021-01-23 06:24:28 +00:00
rmf
Fix build with hdf5 1.10.6
2020-01-01 16:31:57 +00:00
rubygem-ai4r
…
rubygem-cdo
Update to 1.5.1
2020-05-16 11:04:45 +00:00
rubygem-rgeo
Update to 2.2.0
2020-11-21 09:43:54 +00:00
rubygem-rgeo-geojson
Cosmetic change
2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
graphics/proj: Update to 7.2.0
2020-11-18 05:27:28 +00:00
rubygem-rgeo-shapefile
Update to 3.0.0
2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
scidavis
Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0
2020-12-08 20:03:07 +00:00
segyio
science/segyio: Update 1.9.4 -> 1.9.5
2020-12-17 20:35:23 +00:00
shelxle
science/shelxle: Update 1.0.1205 -> 1.0.1215
2021-01-26 20:44:17 +00:00
siesta
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:40:45 +00:00
sigrok-cli
…
sigrok-firmware
…
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.7
2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
…
silo
science/silo: Backport of patches from Debian to support Python 3
2020-09-27 11:32:55 +00:00
simbody
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
simgrid
science/simgrid: Update 3.25 -> 3.26
2021-01-04 22:59:09 +00:00
simint
…
simlib
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
2021-01-02 01:46:08 +00:00
simsmith
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
2020-05-28 08:43:29 +00:00
smoldyn
science/smoldyn: Update 2.62 -> 2.63
2020-12-20 06:45:09 +00:00
sparta
science/sparta: Update 24Jan2020 -> 6Jul2020
2020-07-13 23:41:01 +00:00
spglib
science/spglib: Update 1.15.1 -> 1.16.0
2020-08-03 07:26:08 +00:00
step
Update KDE Release-Service to 20.12.2
2021-02-04 19:21:17 +00:00
svmlight
…
szip
…
teem
…
tfel
Upgrade to 3.4.0
2020-12-13 14:48:11 +00:00
tfel-edf
- Chase gfortran10 and do not force Gcc any more;
2021-01-24 11:19:08 +00:00
thermofun
New port: science/thermofun: Code for calculating thermodynamic properties of materials
2021-02-02 00:48:20 +00:00
tinker
science/tinker: Update 8.8.1 -> 8.8.3
2020-11-10 22:54:52 +00:00
udunits
Update to 2.2.28
2021-01-03 20:05:21 +00:00
v_sim
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
vipster
science/vipster: Update 1.18b.20200514 -> 1.19.1b-14
2020-12-22 11:06:15 +00:00
vmd
Bump PORTREVISION for science/netcdf shlib change
2021-01-26 14:04:01 +00:00
voro++
…
votca
science/votca: Update 1.6.2 -> 1.6.3
2020-12-18 05:40:58 +00:00
wannier90
science/wannier90: Rename the shared library libwannier90.so -> libwannier.so to match the static library name that it creates
2021-01-02 00:39:14 +00:00
wwplot
science/wwplot: Update 0.0.7 -> 0.0.8
2020-01-25 17:53:30 +00:00
wxmacmolplt
x11-toolkits/wxgtk30: Update to 3.0.5.1
2020-05-17 05:55:12 +00:00
xcrysden
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
2020-12-26 11:48:36 +00:00
xdrawchem
science/xdrawchem: 1.10.2-1 -> 1.11.0-2
2021-01-13 00:52:20 +00:00
xtb
science/xtb: update to 6.3.3
2020-09-20 21:19:02 +00:00
yoda
science/yoda: Update 1.8.4 -> 1.8.5
2020-12-06 20:30:15 +00:00
Makefile
Sort SUBDIRs
2021-02-06 20:42:39 +00:00